BAC Information

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BAC

Clone NameMSMg01-515G12
Chromosome7 (Build37)
Map Location 97,057,636 - 97,058,240
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81
Downstream genel7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515G12.T7 (MSMg01no515_g12.b1)MSMg01-515G12.TJ (MSMg01no515_g12.g1)
ACCAG587653AG587654
length779785
length of high quality
(start - end)
615 (47 - 661)605 (77 - 681)
definitionCHROMAT_FILE: MSMg01no515_g12.b1 PHD_FILE: MSMg01no515_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:42 2005CHROMAT_FILE: MSMg01no515_g12.g1 PHD_FILE: MSMg01no515_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGC
GGAATTCTTTGTTCATTTCTGAGCCCCATCTTTTAAGGGGGTTATTTGAT
TTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGCATATTAATCC
CCTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACTGTGTCTATTAGAATGGCTTCTCCAGCTTGTTTC
TTCAGACCATTTGCTTGGAAAATTGTTTTCCAGCCTTTCACTCTGAGGTA
GTTTCTGTCTTTTTCCCTGAGATGGGTTTCCTGTAAGCAGCAGAATGTTG
GGTCCTGTTTGTGTAGCCAGTCTGTTAGTCTATGTCTTTTTATTGGGGAA
TTGAGTCCATTGATATTAAGAGATATTAAGGAAAAGTAATTGTTGCTTCC
TTTTATTTTTGTTGTTAGAGTTGGCATTCTGTTCTTGTGGCTGTCTTCTT
TTAGGTTTGTTGAGGGATTATCTTCTTGTTTTTTCTAGGGCGTGGTTCCC
GTCTTTGTATTGGTTTTTTTCTGTTATTATCCTTTGAAGGGCTGGATTCG
TGGAAAGATAATGTGTGAATTTGGTTTTGTCGTGGAATACTTTGGTTTCT
CCATCTATGGTAATTGAGAGTTTGGCCGGGTATAGTAGCCTGGGCTGGCA
TTTGTGTTCTCTTAGTGCCTGGATAACATCTGTCCAGGGTCTTCTGGCTT
TAAAGTCTCTGGTGAAAGTCTGGTGTATT
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCAGTCGATGGAGTCCAAGGT
AGAGAGCAGCACTTGGCACTGCCCGTTCTCTCCCTCACCTTTCGAGAGAG
CCAGGTAGGACTGCCTGCTCAAGCTGTCAGGAACCAAACATCTCAAGAAC
AAATCTTGCTTCTGTTCTCTTTATGAAAGCCACTCTTTATGTTCTCTTTA
TGAAAGCACCGGATAAAGTTCCAGCCCCTTTGTATCTCGTAAACTCTCTT
GTGGGATGTTCCTACTGGATGTGTATGTGCACGCCCCCACCCCCCATCTG
CGTCGTATCTATATGCTCCTCTCCCGAGGGAGATCTCTATGGGGAGTCGG
TGTGGGGGAGAGTAGGGGCCAGCTGAGGAGTCCCTGCCAGCTGCAGCTGT
TTTTCTCCTAAAGTAAAAGATTTGATGTGCTGTTAGGTGGATTAATTTCT
ATCCCAGAACTACACAATCTAATCTACATTAGGCAAGTCTGTCTAATTTT
CCTACTGGCATTTGTTCTTCCTCTGGTTTTTGACGGATCGGATCGTCATG
TTAACAGCATGCGGTTCTGCTGGAACCGCGTGGGTAACTTAAGCTAGGCT
TTAAATAGGTCACTTTCATCTGACCGCTTCGTGGGACAGTGGCTAGCCTG
CCTCTGTTGTTACCCATGCAGTAGTCTGACACTTAGTTGGTTTTATAAAA
TTGTCAGCGACAAGTCACAGACGTTACATGCGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_g12.g1 MSMg01no515_g12.g1 CHROMAT_FILE:
MSMg01no515_g12.g1 PHD_FILE: MSMg01no515_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:42 2005
         (605 letters)



>mm_chr7_97057436_97058440
          Length = 1005

 Score = 1093 bits (565), Expect = 0.0
 Identities = 595/605 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccccagtcgatggagtccaaggtagagagcagcacttggcactgcccgttctctccctc 60
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 805 tccccagtcgatggagtccaaggtacagagcagcacgtggcactgcccgttctctccctc 746

                                                                       
Query: 61  acctttcgagagagccaggtaggactgcctgctcaagctgtcaggaaccaaacatctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 745 acctttcgagagagccaggtaggactgcctgctcaagctgtcaggaaccaaacatctgaa 686

                                                                       
Query: 121 gaacaaatcttgcttctgttctctttatgaaagccactctttatgttctctttatgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaacaaatcttgcttctgttctctttatgaaagccactctttatgttctctttatgaaag 626

                                                                       
Query: 181 caccggataaagttccagcccctttgtatctcgtaaactctcttgtgggatgttcctact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caccggataaagttccagcccctttgtatctcgtaaactctcttgtgggatgttcctact 566

                                                                       
Query: 241 ggatgtgtatgtgcacgcccccaccccccatctgcgtcgtatctatatgctcctctcccg 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 ggatgtgtatgtgcacgcccccaccccccatctgcatcgtatctatatgctcctctcccg 506

                                                                       
Query: 301 agggagatctctatggggagtcggtgtgggggagagtaggggccagctgaggagtccctg 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 agggagatctctatggggagtcggtgtgggggagagtaagggccagctgaggagtccctg 446

                                                                       
Query: 361 ccagctgcagctgtttttctcctaaagtaaaagatttgatgtgctgttaggtggattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 ccagctgcagctgtttttctcctaaagtaaaagatttgatgtgctgttaggtgaattaat 386

                                                                       
Query: 421 ttctatcccagaactacacaatctaatctacattaggcaagtctgtctaattttcctact 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 ttctatcccagaactacacaatctaatctacattaggcaaatctgtctaattttcctact 326

                                                                       
Query: 481 ggcatttgttcttcctctggtttttgacggatcggatcgtcatgttaacagcatgcggtt 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 ggcatttgttcttcctctggtttttgacggatcggatcggcatgttaacagcatgcggtt 266

                                                                       
Query: 541 ctgctggaaccgcgtgggtaacttaagctaggctttaaataggtcactttcatctgaccg 600
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 265 ctgctggaaccgcgtgggtaacttaagctaggcttttaataggtctctttcatctgaccg 206

                
Query: 601 cttcg 605
           |||||
Sbjct: 205 cttcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)