BAC Information

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BAC

Clone NameMSMg01-516D21
Chromosome7 (Build37)
Map Location 148,667,525 - 148,866,101
singlet/doubletdoublet
Overlap geneTspan4, Chid1, Ap2a2, Muc6
Upstream geneOlfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l
Downstream geneLOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516D21.T7 (MSMg01no516_d21.b1)MSMg01-516D21.TJ (MSMg01no516_d21.g1)
ACCAG588287AG588288
length761766
length of high quality
(start - end)		656 (52 - 707)615 (81 - 695)
definitionCHROMAT_FILE: MSMg01no516_d21.b1 PHD_FILE: MSMg01no516_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:53 2005CHROMAT_FILE: MSMg01no516_d21.g1 PHD_FILE: MSMg01no516_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,865,548 - 148,866,101)(148,667,525 - 148,668,139)
sequence
NNTTTAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGGCAGGTGTCACCTTATCCAAGGGATCAAGGCTCACAT
GCCAGCAACAGAATGACAATGCCATGTCATACGCTCTAACACACGACACT
GAGGTGAGCCCATGGCTCTTGTAAAATCCCCTGCACAACCCCAAATTCGT
GATTTTACTTTTACCTTTTTATTTTATTAGCCTGGGGCTGGTGTGCAGAG
GTCCGAGGAAGACTTGTAGGGATCCACTCTCCTACTAGACAGTTTCCAAA
GATTAGACTCAAGTCATCAGGCTTCCTATGCCATCTGTGCCAACTCCCTG
ACCTACAACTCTAACTTTAATCAAGAGCAGACATGCAGCAAATTCAGATG
AAGGGACAGTCTCCACATACCTGGTCACCACTTTCTGTGAAAGAAGAGGG
TAAGGATGAGAGGGGACAAAGGAGACAGGAATGTTCTGCAGACCATGGTT
TGGTGCAACAGAGGACCGCTTGGTGAAATGTCTCAGCTCACCTGGTCACC
TAGTATCCCTGCCAGGTGGTACCCATAGGCCCTGGCAGTATGGAGACCCT
GCAGTGCCATATCCCAGCTGACCTGGGAGACTGGCAGCAGGCTTCCCAGA
GGCAGGGTAGCCACCTATTCCTCTGCATCATGGATGGCTAGTGATAGGTT
CCCATCAGTGCCCTGGACATGAGTGTCGGGAGCCGTTTGCTGCTTCTCTG
AAGGGGGGGGT

NTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTTTTAAGTTAGAAAA
CCTCGTGGACACCTCACCCTCCCAGGCACCGCGGGCTCCCTAAGGCGCTT
GAAAGCTAAAGCCGCTCAAGTTGCCACCAACAGCAATTGGGTCACGTCTT
CATTTCCTCGGGGCTTTGCACATCATTGATGTGCTTGGAGATTTGCTGCC
GAACGGGCAGCGGGCCTGTTGGATGTAGTCTGGGGTGCAGGTTTGGGGTC
GAGAGCTGCTGCGGTGTCATTCCCGACCCAGTGCCATCAAACGCTTCCCC
TGTCCTTCAGCTGCATCTTCTTGGGAGACCCCGGGAGGGTAACTGGGAGG
TGGGGGCTCGGGGTCGCTGCGATTGGCCGGTGGGGCGGGGTCCTCGAGGG
GCGGGGCCGAGCTGGATTGGCCGGGCGCTCGCGGGGCGCAGCGGGCCGGC
CCGCAGGTGTCTGGCCGCGGGGTGGGAGCCCGCTCGCTGCTACCGCGGGT
CCGGGGAGGTGCGGGAGCTCGCCGGCGTGGTGCGGATGGAGCGTCCGGTA
GCCACGGGTGCAGAGCGCTGACAACGACTGTANCCAGTGAGCGTGGCGGC
GGGGGCCCAGCCTCCCCACCGCGATGCGCCGCTCCAGCACGGACGAATCC
ACGTACCGGCGCAGCCCTTCTTCGGAGAGCAAGGAGCCAGGCTTTGCGCG
CGGCGGCCCCTTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_d21.b1 MSMg01no516_d21.b1 CHROMAT_FILE:
MSMg01no516_d21.b1 PHD_FILE: MSMg01no516_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:53 2005
         (656 letters)



>mm_chr7_148865046_148866101
          Length = 1056

 Score = 1048 bits (542), Expect = 0.0
 Identities = 551/554 (99%)
 Strand = Plus / Minus

                                                                        
Query: 103  gtgagcccatggctcttgtaaaatcccctgcacaaccccaaattcgtgattttactttta 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 gtgagcccatggctcttgtaaaatcccctgcacaaccccaaattcgtgattttactttta 997

                                                                        
Query: 163  cctttttattttattagcctggggctggtgtgcagaggtccgaggaagacttgtagggat 222
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 996  cctttttattttattagcctggggctggtgtgcagaggtcagaggaagacttgtggggat 937

                                                                        
Query: 223  ccactctcctactagacagtttccaaagattagactcaagtcatcaggcttcctatgcca 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  ccactctcctactagacagtttccaaagattagactcaagtcatcaggcttcctatgcca 877

                                                                        
Query: 283  tctgtgccaactccctgacctacaactctaactttaatcaagagcagacatgcagcaaat 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876  tctgtgccaactccctgacctacaactctaactttaatcaagagcagacatgcagcaaat 817

                                                                        
Query: 343  tcagatgaagggacagtctccacatacctggtcaccactttctgtgaaagaagagggtaa 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  tcagatgaagggacagtctccacatacctggtcaccactttctgtgaaagaagagggtaa 757

                                                                        
Query: 403  ggatgagaggggacaaaggagacaggaatgttctgcagaccatggtttggtgcaacagag 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  ggatgagaggggacaaaggagacaggaatgttctgcagaccatggtttggtgcaacagag 697

                                                                        
Query: 463  gaccgcttggtgaaatgtctcagctcacctggtcacctagtatccctgccaggtggtacc 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696  gaccgcttggtgaaatgtctcagctcacctggtcacctagtatccctgccaggtggtacc 637

                                                                        
Query: 523  cataggccctggcagtatggagaccctgcagtgccatatcccagctgacctgggagactg 582
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 636  cataggccctggcagtatggagaccctgcagtgccgtatcccagctgacctgggagactg 577

                                                                        
Query: 583  gcagcaggcttcccagaggcagggtagccacctattcctctgcatcatggatggctagtg 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  gcagcaggcttcccagaggcagggtagccacctattcctctgcatcatggatggctagtg 517

                          
Query: 643  ataggttcccatca 656
            ||||||||||||||
Sbjct: 516  ataggttcccatca 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_d21.g1 MSMg01no516_d21.g1 CHROMAT_FILE:
MSMg01no516_d21.g1 PHD_FILE: MSMg01no516_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:53 2005
         (615 letters)



>mm_chr7_148667325_148668339
          Length = 1015

 Score = 1183 bits (612), Expect = 0.0
 Identities = 614/615 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttttttaagttagaaaacctcgtggacacctcaccctcccaggcaccgcgggctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttttttaagttagaaaacctcgtggacacctcaccctcccaggcaccgcgggctccc 260

                                                                       
Query: 61  taaggcgcttgaaagctaaagccgctcaagttgccaccaacagcaattgggtcacgtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaggcgcttgaaagctaaagccgctcaagttgccaccaacagcaattgggtcacgtctt 320

                                                                       
Query: 121 catttcctcggggctttgcacatcattgatgtgcttggagatttgctgccgaacgggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttcctcggggctttgcacatcattgatgtgcttggagatttgctgccgaacgggcag 380

                                                                       
Query: 181 cgggcctgttggatgtagtctggggtgcaggtttggggtcgagagctgctgcggtgtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggcctgttggatgtagtctggggtgcaggtttggggtcgagagctgctgcggtgtcat 440

                                                                       
Query: 241 tcccgacccagtgccatcaaacgcttcccctgtccttcagctgcatcttcttgggagacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccgacccagtgccatcaaacgcttcccctgtccttcagctgcatcttcttgggagacc 500

                                                                       
Query: 301 ccgggagggtaactgggaggtgggggctcggggtcgctgcgattggccggtggggcgggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgggagggtaactgggaggtgggggctcggggtcgctgcgattggccggtggggcgggg 560

                                                                       
Query: 361 tcctcgaggggcggggccgagctggattggccgggcgctcgcggggcgcagcgggccggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctcgaggggcggggccgagctggattggccgggcgctcgcggggcgcagcgggccggc 620

                                                                       
Query: 421 ccgcaggtgtctggccgcggggtgggagcccgctcgctgctaccgcgggtccggggaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccgcaggtgtctggccgcggggtgggagcccgctcgctgctaccgcgggtccggggaggt 680

                                                                       
Query: 481 gcgggagctcgccggcgtggtgcggatggagcgtccggtagccacgggtgcagagcgctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcgggagctcgccggcgtggtgcggatggagcgtccggtagccacgggtgcagagcgctg 740

                                                                       
Query: 541 acaacgactgtanccagtgagcgtggcggcgggggcccagcctccccaccgcgatgcgcc 600
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaacgactgtagccagtgagcgtggcggcgggggcccagcctccccaccgcgatgcgcc 800

                          
Query: 601 gctccagcacggacg 615
           |||||||||||||||
Sbjct: 801 gctccagcacggacg 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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