BAC Information

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BAC

Clone NameMSMg01-516D24
Chromosome7 (Build37)
Map Location 116,499,541 - 116,549,478
singlet/doubletdoublet
Overlap geneStk33, EG668320
Upstream geneOlfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1
Downstream gene1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516D24.T7 (MSMg01no516_d24.b1)MSMg01-516D24.TJ (MSMg01no516_d24.g1)
ACCAG588292AG588293
length776786
length of high quality
(start - end)		540 (50 - 589)477 (83 - 559)
definitionCHROMAT_FILE: MSMg01no516_d24.b1 PHD_FILE: MSMg01no516_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:54 2005CHROMAT_FILE: MSMg01no516_d24.g1 PHD_FILE: MSMg01no516_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,548,943 - 116,549,478)(116,499,541 - 116,499,971)
sequence
NNNGGTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGAATTCCTGCAGGCTTAGATTATAGTCACTGTGCTGTAT
CATCTGCATTTGATTGATGTTCAGTTACTTCAATTACTGCTAGATTGATC
TTTCTAAAGCACAACTTTGATGATGCTTTTTCTTGCTTAGAAATCTTTAC
CAGCTCCCCAATTACCCAATAAAATCTAGACTTCTCAGCTCCTGGTCAAG
TCCTCCCAAATTGGCTCTGGTCTCTCTAGCCGGCTTCAGCTTGAATTCCT
CCTGTGTCAGCTTCTGAATGAGGAGGGCCACGTTCCCACGCCCGCCTTTG
CCCACGGCCCTTCCAGTTCACTTCCCTTGTAAGAATGTCCAAATCCTGTG
TTTATTCCCAGGCCACCTCCCCCGTTGCCACTCCATCTCCAGGTCCCGTC
TCATCACTCAGCTAGAAATCACCTTTTCTTTCTCATAGAATCATTTTATT
TTCAGTGCTTTTAAGTACTTCTTCCTGGTTTTGTTAAACTGATAAGTCAT
AATCTTATACATTTACAGAGTACAGTGTTTGTTTGATATAGTGTGGAATG
GCAAAATTGGCTACCCTTACCTACCTTTTTTTTTGGTGAAACAATGAGAT
TTATCTCAACATTGAAGACTACACTACAGTATTACTTCCTGTAGTTACCC
TGATATGCAATACATCTCTAAACTTACTCTTGTCTGACACTTTANTACAC
TTTTGAACATAACTAACTTTCTGTTA

NNNNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTAACAAAGCAATGG
CTTTAAATTTACCGTGTGGGTCTGGTGGAGAAGGGATGAATTGAAAGCTT
GGTGTGCTGAGAAATGACCTTGCTAGAAAAGAAATGGAGAAAGAGTAGAA
GAAACTGTAAAGACAAGGAAATCAGCCCACTTTTTCTTGTCAAATCGAAG
AACAATCAGTTTGAAAGTAAGAGTGACTCAGGGAGGAAAGGCACTTGCTG
CCAAGTCTGGTGACCTGATTTTAACCGCAGCACCCACATGGTGGAAGGCA
AGAACTCATCTCTTGACCTCCACATACATGCTGTGGCATGCCCACATCTA
CCCACACATACATATATACACATATGTAATAAATATAATTTTAATCTTAT
TATATTGAAAATGTAAGTCCAAATATTATTAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATNGATNACNNTNTNNATATNCNCTATAACATTTTGTGGTTTCTGC
CCATCATCTGTATCTTGAATGTTCTCTGGAGCACTACAAGAGAGGAACTT
CCAAATCGCAACAATTTTCCATGAAATTACTTTGGTGGCTAAAAAAATGT
GTGATGTGAGCCCCCCGATCACATGTGGGAAATGAATTTTGAACCTCCAT
ACCCCTTCCAATCTGAAAAGCTAACTCCAAAGGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_d24.b1 MSMg01no516_d24.b1 CHROMAT_FILE:
MSMg01no516_d24.b1 PHD_FILE: MSMg01no516_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:54 2005
         (540 letters)



>mm_chr7_116548555_116549494
          Length = 940

 Score = 1029 bits (532), Expect = 0.0
 Identities = 535/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgaattcctgcaggcttagattatagtcactgtgctgtatcatctgcatttga 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 924 gaattcctgaattcctgcaggcttacattatagtcactgtgctgtatcatctgcatttga 865

                                                                       
Query: 65  ttgatgttcagttacttcaattactgctagattgatctttctaaagcacaactttgatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ttgatgttcagttacttcaattactgctagattgatctttctaaagcacaactttgatga 805

                                                                       
Query: 125 tgctttttcttgcttagaaatctttaccagctccccaattacccaataaaatctagactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgctttttcttgcttagaaatctttaccagctccccaattacccaataaaatctagactt 745

                                                                       
Query: 185 ctcagctcctggtcaagtcctcccaaattggctctggtctctctagccggcttcagcttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctcagctcctggtcaagtcctcccaaattggctctggtctctctagccggcttcagcttg 685

                                                                       
Query: 245 aattcctcctgtgtcagcttctgaatgaggagggccacgttcccacgcccgcctttgccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aattcctcctgtgtcagcttctgaatgaggagggccacgttcccacgcccgcctttgccc 625

                                                                       
Query: 305 acggcccttccagttcacttcccttgtaagaatgtccaaatcctgtgtttattcccaggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acggcccttccagttcacttcccttgtaagaatgtccaaatcctgtgtttattcccaggc 565

                                                                       
Query: 365 cacctcccccgttgccactccatctccaggtcccgtctcatcactcagctagaaatcacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacctcccccgttgccactccatctccaggtcccgtctcatcactcagctagaaatcacc 505

                                                                       
Query: 425 ttttctttctcatagaatcattttattttcagtgcttttaagtacttcttcctggttttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttctttctcatagaatcattttattttcagtgcttttaagtacttcttcctggttttg 445

                                                                   
Query: 485 ttaaactgataagtcataatcttatacatttacagagtacagtgtttgtttgatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaaactgataagtcataatcttatacatttacagagtacagtgtttgtttgatat 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_d24.g1 MSMg01no516_d24.g1 CHROMAT_FILE:
MSMg01no516_d24.g1 PHD_FILE: MSMg01no516_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:54 2005
         (477 letters)



>mm_chr7_116499341_116500217
          Length = 877

 Score =  826 bits (427), Expect = 0.0
 Identities = 430/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtaacaaagcaatggctttaaatttaccgtgtgggtctggtggagaagggatgaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtaacaaagcaatggctttaaatttaccgtgtgggtctggtggagaagggatgaatt 260

                                                                       
Query: 61  gaaagcttggtgtgctgagaaatgaccttgctagaaaagaaatggagaaagagtagaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagcttggtgtgctgagaaatgaccttgctagaaaagaaatggagaaagagtagaaga 320

                                                                       
Query: 121 aactgtaaagacaaggaaatcagcccactttttcttgtcaaatcgaagaacaatcagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgtaaagacaaggaaatcagcccactttttcttgtcaaatcgaagaacaatcagttt 380

                                                                       
Query: 181 gaaagtaagagtgactcagggaggaaaggcacttgctgccaagtctggtgacctgatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaagtaagagtgactcagggaggaaaggcacttgctgccaagtctggtgacctgatttt 440

                                                                       
Query: 241 aaccgcagcacccacatggtggaaggcaagaactcatctcttgacctccacatacatgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccgcagcacccacatggtggaaggcaagaactcatctcttgacctccacatacatgct 500

                                                                       
Query: 301 gtggcatgcccacatctacccacacatacatatatacacatatgtaataaatataatttt 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggcatacccacatctacccacacatacatatatacacatatgtaataaatataatttt 560

                                                                       
Query: 361 aatcttattatattgaaaatgtaagtccaaatattattagatagatagatagatagatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcttattatattgaaaatgtaagtccaaatattattagatagatagatagatagatag 620

                      
Query: 421 atagatagata 431
           |||||||||||
Sbjct: 621 atagatagata 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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