BAC Information

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BAC

Clone NameMSMg01-516I03
Chromosome7 (Build37)
Map Location 86,445,064 - 86,576,439
singlet/doubletdoublet
Overlap geneAbhd2, Rlbp1, BC025462
Upstream geneNtrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8
Downstream genePolg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516I03.T7 (MSMg01no516_i03.b1)MSMg01-516I03.TJ (MSMg01no516_i03.g1)
ACCAG588486AG588487
length752767
length of high quality
(start - end)		695 (53 - 747)607 (81 - 687)
definitionCHROMAT_FILE: MSMg01no516_i03.b1 PHD_FILE: MSMg01no516_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:16 2005CHROMAT_FILE: MSMg01no516_i03.g1 PHD_FILE: MSMg01no516_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,575,751 - 86,576,439)(86,445,064 - 86,445,669)
sequence
NNNNACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTATCACTACACAGGTAAGGAACTTCAAACATTGCTC
GGCACACAACAGAGCCTGAAAAAAATGCTGGCTATTATTTTCCTCTGTCC
TCTTTACTTCTGGAGTCTGAAGAATTTGGAAAGCACTGTCCTATGCCTTC
AAACATGGCTTTTAATTCTTGTTAGAAGTGTGAAGATGCTTGAAAGATAT
CATTTTACAGAGGGTCATGCCAAGACCCAGTGACAAGTGTTTCAGGTAGC
AAAGGCCTTCCAAGGATTTCCCCCTATCTAAGACCTTAATTTCAAACGGA
TGTTTTTTGTTTTTTGTTTCCAAAAGCATCACCATGGAGCAATGGAGGAT
GGGGCTGCATCAGTTCACATCTATCTGCAGGAAAATGATGCACTGGGGGC
CTAGCTTAGCCCTCCCAGTGGAGAATATATGTTATAGAGCTGGTTTAAAA
AAAAAAAGATTCTGATAATGCTTAATGAATAAATATTGATATTTATTTTT
ATCTGAATTCATCTCATCTTGATGATCCTTTGAAGTATTTCATTAATTTA
AAACATTTTTTGAGTTGGGTCTGGAGGCACATACCTTTAATCCCAGCACT
TGGGAGGCAGAGACACAAGGATATCTCTGAGTTCAAGGCCAGCCTGGTCT
ACACACCGGGTCCCAGGGTACCCAGGGATATATAGAGAGCCTACCTCAAA
AG

NNNCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAACACACAAGCTCCTTCT
AACTTGAACATGACAAATCATTTGGAACCAAGGGATCCTGTTCCTCTTAG
ATTTGGGTTTTTGTGTTTTTGTTTTTTTGTTTTTTTTTACCCATTGTCTT
CCTTCTGGTTAGAGTCTGGTCCTGTCATTTGTAGCAAACTGTTCTCACAT
AGTTTTGTCCTTGTGTGACACTCAGCACCCCTCAGATATGTCCTGCTATC
AGATCCTCTCAATAACTTGGAAGCCAAACTCATTTTTTTCCTGTCATTTT
TAAGGATTGGGAAACTGTGCTTGACACTAAGCCAGTCTAACAGAGTCGAG
AGTGGGTCCCCTTCTTGTCCCTGGAGAGAAGTGGACAAGGAGTGCTCTCA
GGATACAGGGAAGCGTGCAGAAGAGCGAGGCTGTCCCACGGAAGGGTTGT
TAGCAGGGTTCCCCACTAGGTAGCCTTCGGTTCCTGCTTGCCAGTTTCTA
AACTCTCTGGTAGAAGCCGCCATGTTTCTCTGAGACACATTTCCGGAGTG
GCTTCACTTGTGTTTGAAGTTGAGGGAGGGTAGGAAATGGCTAGTGTGGA
TAAAAAACTTCTCATGGGACTTTGAAGTTCTTCTCCTAGGAGGAAGCCAC
CTCCGGGCTCCACAAACAGTCACCTCTGTTGGGAGGTTCAAGTAGCTGGT
TCACAGTGAATGCCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_i03.b1 MSMg01no516_i03.b1 CHROMAT_FILE:
MSMg01no516_i03.b1 PHD_FILE: MSMg01no516_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:16 2005
         (695 letters)



>mm_chr7_86575682_86576774
          Length = 1093

 Score = 1297 bits (671), Expect = 0.0
 Identities = 686/691 (99%), Gaps = 2/691 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactatcactacacaggtaaggaacttcaaacattgctcggcacacaacagagcc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gaattcactatcaccacacaggtaaggaacttcaaacattgctcggcacacaacagagcc 699

                                                                       
Query: 65  tgaaaaaaatgctggctattattttcctctgtcctctttacttctggagtctgaagaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tgaaaaaaatgctggctattattttcctctgtcctctttacttctggagtctgaagaatt 639

                                                                       
Query: 125 tggaaagcactgtcctatgccttcaaacatggcttttaattcttgttagaagtgtgaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tggaaagcactgtcctatgccttcaaacatggcttttaattcttgttagaagtgtgaaga 579

                                                                       
Query: 185 tgcttgaaagatatcattttacagagggtcatgccaagacccagtgacaagtgtttcagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgcttgaaagatatcattttacagagggtcatgccaagacccagtgacaagtgtttcagg 519

                                                                       
Query: 245 tagcaaaggccttccaaggatttccccctatctaagaccttaatttcaaacggatgtttt 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 518 tagcaaaggccttccaaggattt-cccctatctaagaccttaatttcaaacggatgtttt 460

                                                                       
Query: 305 ttgttttttgtttccaaaagcatcaccatggagcaatggaggatggggctgcatcagttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttgttttttgtttccaaaagcatcaccatggagcaatggaggatggggctgcatcagttc 400

                                                                       
Query: 365 acatctatctgcaggaaaatgatgcactgggggcctagcttagccctcccagtggagaat 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acatctatctacaggaaaatgatgcactgggggcctagcttagccctcccagtggagaat 340

                                                                       
Query: 425 atatgttatagagctggtttaaaaaaaaaaagattctgataatgcttaatgaataaatat 484
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atatgttatagagctggttt-aaaaaaaaaagattctgataatgcttaatgaataaatat 281

                                                                       
Query: 485 tgatatttatttttatctgaattcatctcatcttgatgatcctttgaagtatttcattaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgatatttatttttatctgaattcatctcatcttgatgatcctttgaagtatttcattaa 221

                                                                       
Query: 545 tttaaaacattttttgagttgggtctggaggcacatacctttaatcccagcacttgggag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tttaaaacattttttgagttgggtctggaggcacatacctttaatcccagcacttgggag 161

                                                                       
Query: 605 gcagagacacaaggatatctctgagttcaaggccagcctggtctacacaccgggtcccag 664
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 160 gcagagacacaaggatatctctgagttcaaggccagcctggtctatacaccgggtcccag 101

                                          
Query: 665 ggtacccagggatatatagagagcctacctc 695
           |||||||||||||||||||||||||||||||
Sbjct: 100 ggtacccagggatatatagagagcctacctc 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1093
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1083
Effective search space:   741855
Effective search space used:   741855
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_i03.g1 MSMg01no516_i03.g1 CHROMAT_FILE:
MSMg01no516_i03.g1 PHD_FILE: MSMg01no516_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:16 2005
         (607 letters)



>mm_chr7_86444864_86445869
          Length = 1006

 Score = 1104 bits (571), Expect = 0.0
 Identities = 598/607 (98%), Gaps = 1/607 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaacacacaagctccttctaacttgaacatgacaaatcatttggaaccaagggatcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaacacacaagctccttctaacttgaacatgacaaatcatttggaaccaagggatcctg 260

                                                                       
Query: 61  ttcctcttagatttgggtttttgtgtttttgtttttttgtttttttttacccattgtctt 120
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttcctcttagatttgtgtttttgtgtttttgtttttttg-ttttttttacccattgtctt 319

                                                                       
Query: 121 ccttctggttagagtctggtcctgtcatttgtagcaaactgttctcacatagttttgtcc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccttctggttagagtctggtcgtgtcatttgtagcaaactgttctcacatagttttgtcc 379

                                                                       
Query: 181 ttgtgtgacactcagcacccctcagatatgtcctgctatcagatcctctcaataacttgg 240
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 gtgtgtgacactcagcacccctcagatatgtcctgccatcagatcctctcaataacttgg 439

                                                                       
Query: 241 aagccaaactcatttttttcctgtcatttttaaggattgggaaactgtgcttgacactaa 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 aagccaaactcatttttttcctgtcatttttaaggattgtgaaactgtgcttgacactaa 499

                                                                       
Query: 301 gccagtctaacagagtcgagagtgggtccccttcttgtccctggagagaagtggacaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gccagtctaacagagtcgagagtgggtccccttcttgtccctggagagaagtggacaagg 559

                                                                       
Query: 361 agtgctctcaggatacagggaagcgtgcagaagagcgaggctgtcccacggaagggttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtgctctcaggatacagggaagcgtgcagaagagcgaggctgtcccacggaagggttgt 619

                                                                       
Query: 421 tagcagggttccccactaggtagccttcggttcctgcttgccagtttctaaactctctgg 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 tagcagggttccccactaggtagccttcagttcctgcttgccagtttctaaactctctgg 679

                                                                       
Query: 481 tagaagccgccatgtttctctgagacacatttccggagtggcttcacttgtgtttgaagt 540
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tagaagccaccatgcttctctgagacacatttccggagtggcttcacttgtgtttgaagt 739

                                                                       
Query: 541 tgagggagggtaggaaatggctagtgtggataaaaaacttctcatgggactttgaagttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgagggagggtaggaaatggctagtgtggataaaaaacttctcatgggactttgaagttc 799

                  
Query: 601 ttctcct 607
           |||||||
Sbjct: 800 ttctcct 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space:   594612
Effective search space used:   594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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