BAC Information

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BAC

Clone NameMSMg01-516I22
Chromosome7 (Build37)
Map Location 78,060,383 - 78,093,793
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516I22.T7 (MSMg01no516_i22.b1)MSMg01-516I22.TJ (MSMg01no516_i22.g1)
ACCAG588524AG588525
length766770
length of high quality
(start - end)		654 (49 - 702)582 (80 - 661)
definitionCHROMAT_FILE: MSMg01no516_i22.b1 PHD_FILE: MSMg01no516_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:20 2005CHROMAT_FILE: MSMg01no516_i22.g1 PHD_FILE: MSMg01no516_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,060,383 - 78,061,033)(78,093,212 - 78,093,793)
sequence
NNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTATCACCATTTGAAGAAGGTGACGTATGGAATGTGATGATA
AGGGACAAGAGCAGTGACAGAGGATTTCAGGTCCGGAAAACAGTTCTAAG
TGAAGGCATTTGCCCCAGAGAGGAAGAGCAAGACATAACTAAAATATTAC
TGCAGAAATTACACTTTCAAAAACAAAAACAAAAACAAAAACAAAGAACA
TAAAAGTTCTGTCTATGAAACTATTACACTCTCAGATGGACACCTGCATG
TAAATGTGCAAAGACAGGCATGGGCAGAACCTTCTCTTTACTAGGGTAGG
TTTCTGCGTTTTCTTTTTCACTTTTAGCAGGATTCTCTTTGTAACAAGTG
AAACATATTTTTAAAAGAAATATTCAGAGAATAAAAAAAAGCAAATAAGA
GGGATACTTAATAATGCTATTATTTCTAACAATCAGCTTCAATATATGTT
CATATATCTACACCCACATATAGATTGATCTGTCTTAGTTGAGTGTACTT
TTTATAAATTCAACAGCATTCATCTTCTCTTGCTATTTAGGGTTATAATG
AATGGATAGAGAAACATCCCATCCTCAGAAATTCCTTGCTTTTTCTTTGA
AATTGAGGTGATAATTTAAAAAAAAGAAAAGAATAAAAGGAAAAGAAAAC
AGGCTCAGAGTAATAGAGCATTAGGGCTGGAAGTATCCTAATATATCATC
TAGTCTACAACTCTAA

NNNNNCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGACAAAGGTGCAGCG
GGAAGGTGGCCACATCCTCTGGGGACAGGAACTAGGTGACTTCAGATCAT
GTTATTTATTTTGTATGAGACACAAATTTGAAAACTGACCCAATGCCAAC
CCACACCTCAGTCACATCAAACAGCCTGGTAGTCAGGAGTCCCTTGAGAC
AACAAAAGACAATTTTTCAAGGCGTTTTAGAATTTCTGCGGGTATTTTTA
GTTGTTCTGTGTGCCTTTCCCTTCTAGAGTGTGGTGATTTCCTTCTCTTT
TCTGTGAGGTCTTTGAGGGAGTACCTTTCACTAACAAACCATGAATATAA
AATATGAAACCAAGATCGCCTACCGCAGAGGAGAAGCCAAACATCACTAA
AAAGGATTACTTTCTTTCACTGTCTAGAAATTTTTCATGGAAGACCTTGG
CTGGCCTTTTGATATAAAAACATCCTAACAAGTATTACACAGGAGTTTTA
AATTAGAACTCGCTGTCACTGAGACAGTTATAAACTGTTAAATATGTCCT
CTCTATGCTAAGCTCCTGTGAAGTATGCGCACAGCCGTGGCCAGGACACT
CTTTCTGACAGGCAGCAGGGTGAGATCACAGGGAGATTTGAAAGCTGTAT
ACATTGATGTGCAGGTGGCTTCCTTGTGTGTGACTGGTCACATGTGTGAT
CGTGGAAGGGGGGTATCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_i22.b1 MSMg01no516_i22.b1 CHROMAT_FILE:
MSMg01no516_i22.b1 PHD_FILE: MSMg01no516_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:20 2005
         (654 letters)



>mm_chr7_78060180_78061233
          Length = 1054

 Score = 1212 bits (627), Expect = 0.0
 Identities = 645/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctatcaccatttgaagaaggtgacgtatggaatgtgatgataagggacaagag 63
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctatcaccatttgaagaaggcgacgtatggaatgtgatgataagggacaagag 263

                                                                       
Query: 64  cagtgacagaggatttcaggtccggaaaacagttctaagtgaaggcatttgccccagaga 123
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 cagtgacagaggatttcaggtccggaaaacagttctaagtgaaggcgtttgccccagaga 323

                                                                       
Query: 124 ggaagagcaagacataactaaaatattactgcagaaattacactttcaaaaacaaaaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaagagcaagacataactaaaatattactgcagaaattacactttcaaaaacaaaaaca 383

                                                                       
Query: 184 aaaacaaaaacaaagaacataaaagttctgtctatgaaactattacactctcagatggac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaacaaaaacaaagaacataaaagttctgtctatgaaactattacactctcagatggac 443

                                                                       
Query: 244 acctgcatgtaaatgtgcaaagacaggcatgggcagaaccttctctttactagggtaggt 303
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acctgcatgtaactgtgcaaagacaggcatgggcagaaccttctctttactagggtaggt 503

                                                                       
Query: 304 ttctgcgttttctttttcacttttagcaggattctctttgtaacaagtgaaacatatttt 363
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttctgcattttctttttcacttttagcaggattctctttgtaacaagtgaaacatatttt 563

                                                                       
Query: 364 taaaagaaatattcagagaataaaaaaaagcaaataagagggatacttaataatgctatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taaaagaaatattcagagaataaaaaaaagcaaataagagggatacttaataatgctatt 623

                                                                       
Query: 424 atttctaacaatcagcttcaatatatgttcatatatctacacccacatatagattgatct 483
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 624 atttctaacaatcagcttcaatatatgttcatatatctacacccacgtatagattgatct 683

                                                                       
Query: 484 gtcttagttgagtgtactttttataaattcaacagcattcatcttctcttgctatttagg 543
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 684 gtcttagttgagtgtactttttataaattcaacagcgttcatcttctcttgctatttagg 743

                                                                       
Query: 544 gttataatgaatggatagagaaacatcccatcctcagaaattccttgctttttctttgaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gttataatgaatggatagagaaacatcccatcctcagaaattccttgctttttctttgaa 803

                                                              
Query: 604 attgaggtgataatttaaaaaaaagaaaagaataaaaggaaaagaaaacag 654
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 attgaggtgataatttaaaaaaaagaaaagaataaaaggaaaagaaaacag 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_i22.g1 MSMg01no516_i22.g1 CHROMAT_FILE:
MSMg01no516_i22.g1 PHD_FILE: MSMg01no516_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:20 2005
         (582 letters)



>mm_chr7_78093012_78093993
          Length = 982

 Score = 1125 bits (582), Expect = 0.0
 Identities = 582/582 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccagacaaaggtgcagcgggaaggtggccacatcctctggggacaggaactaggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tttccagacaaaggtgcagcgggaaggtggccacatcctctggggacaggaactaggtga 723

                                                                       
Query: 61  cttcagatcatgttatttattttgtatgagacacaaatttgaaaactgacccaatgccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cttcagatcatgttatttattttgtatgagacacaaatttgaaaactgacccaatgccaa 663

                                                                       
Query: 121 cccacacctcagtcacatcaaacagcctggtagtcaggagtcccttgagacaacaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cccacacctcagtcacatcaaacagcctggtagtcaggagtcccttgagacaacaaaaga 603

                                                                       
Query: 181 caatttttcaaggcgttttagaatttctgcgggtatttttagttgttctgtgtgcctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 caatttttcaaggcgttttagaatttctgcgggtatttttagttgttctgtgtgcctttc 543

                                                                       
Query: 241 ccttctagagtgtggtgatttccttctcttttctgtgaggtctttgagggagtacctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ccttctagagtgtggtgatttccttctcttttctgtgaggtctttgagggagtacctttc 483

                                                                       
Query: 301 actaacaaaccatgaatataaaatatgaaaccaagatcgcctaccgcagaggagaagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 actaacaaaccatgaatataaaatatgaaaccaagatcgcctaccgcagaggagaagcca 423

                                                                       
Query: 361 aacatcactaaaaaggattactttctttcactgtctagaaatttttcatggaagaccttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aacatcactaaaaaggattactttctttcactgtctagaaatttttcatggaagaccttg 363

                                                                       
Query: 421 gctggccttttgatataaaaacatcctaacaagtattacacaggagttttaaattagaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gctggccttttgatataaaaacatcctaacaagtattacacaggagttttaaattagaac 303

                                                                       
Query: 481 tcgctgtcactgagacagttataaactgttaaatatgtcctctctatgctaagctcctgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcgctgtcactgagacagttataaactgttaaatatgtcctctctatgctaagctcctgt 243

                                                     
Query: 541 gaagtatgcgcacagccgtggccaggacactctttctgacag 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gaagtatgcgcacagccgtggccaggacactctttctgacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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