BAC Information

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BAC

Clone NameMSMg01-516M03
Chromosome7 (Build37)
Map Location 37,210,722 - 37,359,185
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516M03.T7 (MSMg01no516_m03.b1)MSMg01-516M03.TJ (MSMg01no516_m03.g1)
ACCAG588678AG588679
length749767
length of high quality
(start - end)		649 (52 - 700)682 (79 - 760)
definitionCHROMAT_FILE: MSMg01no516_m03.b1 PHD_FILE: MSMg01no516_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:37 2005CHROMAT_FILE: MSMg01no516_m03.g1 PHD_FILE: MSMg01no516_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,358,656 - 37,359,185)(37,210,722 - 37,211,403)
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATGCAACTTTTCTTATTTATATTTGTTTGTAAATACAG
TGGATGAAGTTGACTGTAACCAAGTTATACGTAGTCTTTATTATATAAAA
TATTTCAAATTTTGCTGAGGCAATAACTGTATACAATTGAAGAGTAAATA
TCTGCTTCAGTCTTTCTTTCTCTCCAATTCCAGTTTTGTTAGACTTTCAC
GATCTTATTTATAATTAACGCTAATATTGACATTTCCTGCACATATAAGC
ATTATATGCCGTTGTTTTCATTACTCTCTGTTGCTGTGACAAGAGCAACT
TACTTTATATTAGTTTATGGTTTTACCAGACTTTATTTTAGTTTACAGTT
CCAGAGGAGAGCTCAACATAGCCAGGGTAGGCAAGGCACGGCACGGCAGC
AGGAGAAGGAAGCTGATAGGACGGTTGTTCGAGTTTAGCCATATACTGGG
AAAAGAGTGAACGAACAGAAAGTTGGGTGAGGGTATAAAACCTGAGGGCG
ACCTCCAATGACGTACTTCCCCTAACAAGGCTCCACCTCCTAATGGTTCA
GTACCCTACCTAAATAGCGCCACCAAGTGGAATCAGCTGTTCAAAGACGT
TAGCTTATGAGGAACACTTCTCTCACAATCTTGAAGAATGATCTACTGAT
TTCTTATTCTGTTATTGCATTTTTGTTCTCACAAGTCCTCTATCTAATN

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTAGTCAGGAGTGGTTCCT
TCGCGGTCTAGCTTCAGTTCCTGCCTCCAGGTTCCTGCCCTGAACTATTC
CCTGACTTCCCTCGATGATAGGCTCTAGCCTGTAGGCTGAAATAAACCCA
TTCCTCCTCTAAGTTGGTTTTTGGTCACAGTGTTTACTAGGACAGAAGTT
GCTTGTAACTCACAGCCTGGTGACAAAATGCTGGGAAATGGGATTCCTAA
AGGATGTGTTCAACAGAGGGGAGATGAGGTTCCAGGGGGTGAGATGGTTG
CAGCTAAGATGGTAGAGTGTAGAAGGACAGCAATATCCTCCAGCCCAGGA
GATAAGCCAGGGAGAATATTTGAACAACTATGAGGTCCAAAAGTCCATAG
TCTTTTAATGGCACAGTTGTCTGCAGACTACCAGGGACCTCTAAGGACAG
AGCTAGGGGGTTGAGGATCATTCCCACAATGTTCCCAGGCTCCATGCCTG
CAGAGGTGCCCTGGCTGGTTTCATGTCAACTGGACACAAGCTGGAACTAA
TGAGAGGAAGGAGCCTCAATTGAGAAGATGCCACATAAGATCCAACTGTA
GGTCATTTTCTTACTGATTGATGTGAAAGAACCTAACCCATTGTGTGTGT
GCGTTGTGGGGGAGGGCTATCCTTGGACTGCTGTTCCTGGGCTTTATAGG
AAAGTAGGCTGAGCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_m03.b1 MSMg01no516_m03.b1 CHROMAT_FILE:
MSMg01no516_m03.b1 PHD_FILE: MSMg01no516_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:37 2005
         (649 letters)



>mm_chr7_37358656_37359704
          Length = 1049

 Score =  994 bits (514), Expect = 0.0
 Identities = 526/530 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgcaacttttcttatttatatttgtttgtaaatacagtggatgaagttgact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaattccatgcaacttttcttatttatatttgtttgtaaatacagtggatgaagttgact 471

                                                                       
Query: 65  gtaaccaagttatacgtagtctttattatataaaatatttcaaattttgctgaggcaata 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ataaccaagttatacgtagtctttattatataaaatatttcaaattttgctgaggcaata 411

                                                                       
Query: 125 actgtatacaattgaagagtaaatatctgcttcagtctttctttctctccaattccagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 actgtatacaattgaagagtaaatatctgcttcagtctttctttctctccaattccagtt 351

                                                                       
Query: 185 ttgttagactttcacgatcttatttataattaacgctaatattgacatttcctgcacata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttgttagactttcacgatcttatttataattaacgctaatattgacatttcctgcacata 291

                                                                       
Query: 245 taagcattatatgccgttgttttcattactctctgttgctgtgacaagagcaacttactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 taagcattatatgccgttgttttcattactctctgttgctgtgacaagagcaacttactt 231

                                                                       
Query: 305 tatattagtttatggttttaccagactttattttagtttacagttccagaggagagctca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tatattagtttatggttttaccagactttattttagtttacagttccagaggagagctca 171

                                                                       
Query: 365 acatagccagggtaggcaaggcacggcacggcagcaggagaaggaagctgataggacggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 acatagccagggtaggcaaggcacggcacggcagcaggagaaggaagctgataggacggt 111

                                                                       
Query: 425 tgttcgagtttagccatatactgggaaaagagtgaacgaacagaaagttgggtgagggta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tgttcgagtttagccatatactgggaaaagagtgaacgaacagaaagttgggtgagggta 51

                                                             
Query: 485 taaaacctgagggcgacctccaatgacgtacttcccctaacaaggctcca 534
           |||||||||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct: 50  taaaacctgaaggcgacctccaatgatgtacttccgctaacaaggctcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_m03.g1 MSMg01no516_m03.g1 CHROMAT_FILE:
MSMg01no516_m03.g1 PHD_FILE: MSMg01no516_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:37 2005
         (682 letters)



>mm_chr7_37210522_37211603
          Length = 1082

 Score = 1234 bits (638), Expect = 0.0
 Identities = 671/682 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctagtcaggagtggttccttcgcggtctagcttcagttcctgcctccaggttcctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctagtcaggagtggttccttcgcggtctagcttcagttcctgcctccaggttcctgc 260

                                                                       
Query: 61  cctgaactattccctgacttccctcgatgataggctctagcctgtaggctgaaataaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgaactattccctgacttccctcgatgataggctctagcctgtaggctgaaataaacc 320

                                                                       
Query: 121 cattcctcctctaagttggtttttggtcacagtgtttactaggacagaagttgcttgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattcctcctctaagttggtttttggtcacagtgtttactaggacagaagttgcttgtaa 380

                                                                       
Query: 181 ctcacagcctggtgacaaaatgctgggaaatgggattcctaaaggatgtgttcaacagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcacagcctggtgacaaaatgctgggaaatgggattcctaaaggatgtgttcaacagag 440

                                                                       
Query: 241 gggagatgaggttccagggggtgagatggttgcagctaagatggtagagtgtagaaggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggagatgaggttccagggggtgagatggttgcagctaagatggtagagtgtagaaggac 500

                                                                       
Query: 301 agcaatatcctccagcccaggagataagccagggagaatatttgaacaactatgaggtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcaatatcctccagcccaggagataagccagggagaatatttgaacaactatgaggtcc 560

                                                                       
Query: 361 aaaagtccatagtcttttaatggcacagttgtctgcagactaccagggacctctaaggac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaagtccatagtcttttaatggcacagttgtctgcagactaccagggacctctaaggac 620

                                                                       
Query: 421 agagctagggggttgaggatcattcccacaatgttcccaggctccatgcctgcagaggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagctagggggttgaggatcattcccacaatgttcccaggctccatgcctgcagaggtg 680

                                                                       
Query: 481 ccctggctggtttcatgtcaactggacacaagctggaactaatgagaggaaggagcctca 540
           |||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||
Sbjct: 681 ccctggctggtttcatgtcaactggacacaagccagaattaatgagaggaaggagcctca 740

                                                                       
Query: 541 attgagaagatgccacataagatccaactgtaggtcattttcttactgattgatgtgaaa 600
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 741 attgagaagatgcctcataagatccaactgtaggtcattttcttagtgattgatgtgaaa 800

                                                                       
Query: 601 gaacctaacccattgtgtgtgtgcgttgtgggggagggctatccttggactgctgttcct 660
           ||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 801 gaacccaacccattgtatgtgtgcgttgtgagggagggttatccttggactgctgttcct 860

                                 
Query: 661 gggctttataggaaagtaggct 682
           |||||||||| ||||| |||||
Sbjct: 861 gggctttataagaaagcaggct 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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