BAC Information

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BAC

Clone NameMSMg01-517C24
Chromosome7 (Build37)
Map Location 76,274,185 - 76,274,747
singlet/doubletsinglet
Overlap genenone
Upstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517C24.T7 (MSMg01no517_c24.b1)MSMg01-517C24.TJ (MSMg01no517_c24.g1)
ACCAG589000AG589001
length802798
length of high quality
(start - end)
607 (34 - 640)565 (64 - 628)
definitionCHROMAT_FILE: MSMg01no517_c24.b1 PHD_FILE: MSMg01no517_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:11 2005CHROMAT_FILE: MSMg01no517_c24.g1 PHD_FILE: MSMg01no517_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTG
AGGAATACCGAATGGCAGAGAAGCACCAGAAAAAATGCTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACC
AGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTG
GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTT
GTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATAT
AGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAG
ATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAG
CTATTAAAAAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGA
GGGCATCATCCTGAGTGAGGTAACACAATCACAAAGGAACTCACACAATA
TGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAAGATGCCCAAGAT
ATAAGATACAATTTTCCTAACACATGAAACTCAAGAAAAATGAAGACTGG
AGTGTGAACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTTGGG
AAGAGTTACAGAGACAAATTTTGGAGCTGAGATAAAAGGATGGACCATGT
AN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGTTTGTTCTTTTTATTAAGTCTAGGCTATTAGGT
CTTTGTGAAGCCATAAGGATATAGAATAGAAAATCAGTCTGTTTACAGAG
TACTAATGCTGAATTATGGGCAGATTTTCTTGGTTCTTAAATATATAGGA
TTAAAAGTTGTATGATGACCTTCCAGGCATCTTAGGAAAGAATTTCCCGT
GTTACCTAATTAGTAATCAAGTGCTCTTGAGAACTTATTTTGCTTCTAAA
TCTTTCAGGTTATTCATCTTTAAAATATACGGTCAACCATACGGTCCTTA
CCCTCCTTTAATTACACGCTCACTCAAGCAACCATTTCTCAAGCAGCTAA
CGGAATTTCCTAAACTACTGATTTGGATTTCCAGTAGAAATATTTAATCT
CCATTTATTTTCCTGGGTTGGAAGTAATAATGAATCTTAAACCAAAATAG
CAGAATAAGCTTCTACAATAAACTAATAAGAATCCCATTAGATATGATCT
TTTGGATTATTTTTATTTTATGACTTTAAATTTAATTCTGACAAAATTTA
ATGATTATCTTCATATTATGGAAAGGGTATATGTCAAATCAATGAATAAT
TCACACCAATGAGTTTACCACTCAGTACTGCTGAATATATTCTTTAGCAA
CCTTTATCTATGCATTCTTATTTGCTGTCCTCATTAAGGGGTTTCATTGG
CCATTTATGATCCAAATTTCANTTTCTCCCTTAGAATATTTATCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_c24.g1 MSMg01no517_c24.g1 CHROMAT_FILE:
MSMg01no517_c24.g1 PHD_FILE: MSMg01no517_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:11 2005
         (565 letters)



>mm_chr7_76273983_76274947
          Length = 965

 Score = 1073 bits (555), Expect = 0.0
 Identities = 561/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgtttgttctttttattaagtctaggctattaggtctttgtgaagccataaggatataga 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgtttgttctttttattaagtctaggctattaggtctttgtgaagccataaggatataga 262

                                                                       
Query: 63  atagaaaatcagtctgtttacagagtactaatgctgaattatgggcagattttcttggtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atagaaaatcagtctgtttacagagtactaatgctgaattatgggcagattttcttggtt 322

                                                                       
Query: 123 cttaaatatataggattaaaagttgtatgatgaccttccaggcatcttaggaaagaattt 182
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 323 cttaaatatataggattaaaagttgtatgatgaccttccagccatcttaggaaagaattt 382

                                                                       
Query: 183 cccgtgttacctaattagtaatcaagtgctcttgagaacttattttgcttctaaatcttt 242
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cctgtgttacctaattagtaatcaagtgctcttgagaacttattttgcttctaaatcttt 442

                                                                       
Query: 243 caggttattcatctttaaaatatacggtcaaccatacggtccttaccctcctttaattac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caggttattcatctttaaaatatacggtcaaccatacggtccttaccctcctttaattac 502

                                                                       
Query: 303 acgctcactcaagcaaccatttctcaagcagctaacggaatttcctaaactactgatttg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acgctcactcaagcaaccatttctcaagcagctaacggaatttcctaaactactgatttg 562

                                                                       
Query: 363 gatttccagtagaaatatttaatctccatttattttcctgggttggaagtaataatgaat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gatttccagtagaaatatttaatctccatttattttcctgggttggaagtaataatgaat 622

                                                                       
Query: 423 cttaaaccaaaatagcagaataagcttctacaataaactaataagaatcccattagatat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cttaaaccaaaatagcagaataagcttctacaataaactaataagaatcccattagatat 682

                                                                       
Query: 483 gatcttttggattatttttattttatgactttaaatttaattctgacaaaatttaatgat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gatcttttggattatttttattttatgactttaaatttaattctgacaaaatttaatgat 742

                                  
Query: 543 tatcttcatattatggaaagggt 565
           |||||||||||||||||||||||
Sbjct: 743 tatcttcatattatggaaagggt 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)