BAC Information

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BAC

Clone NameMSMg01-517G01
Chromosome7 (Build37)
Map Location 89,769,545 - 89,770,122
singlet/doubletsinglet
Overlap genenone
Upstream geneHomer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3
Downstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517G01.T7 (MSMg01no517_g01.b1)MSMg01-517G01.TJ (MSMg01no517_g01.g1)
ACCAG589143AG589144
length739735
length of high quality
(start - end)
676 (60 - 735)644 (69 - 712)
definitionCHROMAT_FILE: MSMg01no517_g01.b1 PHD_FILE: MSMg01no517_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:26 2005CHROMAT_FILE: MSMg01no517_g01.g1 PHD_FILE: MSMg01no517_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GGGATTTCAACTTAGCACAGTGGAGGGGAAAGCACAGAGGAAATGGATGG
AAAAGCCTGAAATGTAATTGTCATGGGGGCTCAGCCATGCTGAAACTCGT
GAGTTAAATTCCGGAGGACCCAGTTCTCAGAAGGGATACCCAATTGCTTG
GAGACTTGCCTCCAGGAGTTCCAGATTCTCGCAGTAAATATCAGAAAGTA
ATGCCCACATGCTTCCCAAAGGGTAGGGGAAATGTCCATCTTAAAGTATT
TCTGAGCTCTCTGTTCATTGTTTCATCCCTCAAGAGGAGCTCCTTAGCCA
GGCTTAAATATGGACAAAGGGCATGATTAAGAAACCAGAAGAAAGGGAAC
AAAAGAAAAGGAAGCTTCCAAAAGTAAGCTGAGTCCAGTGTTCCCCCAAA
AGGACCAGTGGCTGTTCAAAGGAGCAGGGGTCCTGCAACATCTATTCCCT
CTGCTTACACAGAGACATCTTCCAATAGTAAACTGAGGCCAAGTCACAAC
TGAGAGTCCTGGCACAGCTCCCCAACATTGCTGCCACCATCTCCCACAGC
TCTGTGGCCAAACCTCAGATAGTGGAGTGGCATTGTTGGCTTACAGACAA
TTCTACTAGGCTCCACCCAACAGCAACCTAGCAATAGCTTATATTATTAG
TTGCTACCAGGTGTGAGCCAGTTGTATATAAGAGGAGCN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACATGGCATTGTAAAAAGCTATACTCCAACGA
CCGCCAGTTGCATCATTCCACAGATGCAATGTTTAGAAATGAAGAGCAGA
TTAGTCATTTCCAAGTGGTGGAATAGAGGGGAGGGAGGGGACACAACTAC
CAAGGGAAGCTTGCAGGTTCCCTGTGATGACAGAAATGTCCCATACTTTA
GCTGTACAAATGGCAACATCCTGGGTATCCCTCTGTGTGTCTCTGGGTGA
GTCCCTGTGCTAGACTCTTTTTTTAATTTTTAATATTTTTTATTACGTAT
TTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCC
CGCCCACTTCCCTACCCACCCATTCCCATTTTTTTTGGCCCTGGCGTTCC
CCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTTTCCA
GTGATGGCGGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGA
GCTTCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCA
GATCTCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCTTCTCTAGCCC
TGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG
GCCCCGGCATAGTCTCACAAGAGACAGCTATATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_g01.b1 MSMg01no517_g01.b1 CHROMAT_FILE:
MSMg01no517_g01.b1 PHD_FILE: MSMg01no517_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:26 2005
         (676 letters)



>mm_chr7_89769047_89770122
          Length = 1076

 Score = 1064 bits (550), Expect = 0.0
 Identities = 571/578 (98%)
 Strand = Plus / Minus

                                                                        
Query: 99   attccggaggacccagttctcagaagggatacccaattgcttggagacttgcctccagga 158
            ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| 
Sbjct: 1076 attccagaggacccagttcttagaagggatacccaattgctttgagacttgcctccaggg 1017

                                                                        
Query: 159  gttccagattctcgcagtaaatatcagaaagtaatgcccacatgcttcccaaagggtagg 218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 gttccagattctcgcagtaaatatcagaaagtaatgcccacatgcttcccaaagggtagg 957

                                                                        
Query: 219  ggaaatgtccatcttaaagtatttctgagctctctgttcattgtttcatccctcaagagg 278
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  ggaaatgtccatcttaaagtatttctgagctctctgttcattgtttcatccctcaagagg 897

                                                                        
Query: 279  agctccttagccaggcttaaatatggacaaagggcatgattaagaaaccagaagaaaggg 338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  agctccttagccaggcttaaatatggacaaagggcatgattaagaaaccagaagaaaggg 837

                                                                        
Query: 339  aacaaaagaaaaggaagcttccaaaagtaagctgagtccagtgttcccccaaaaggacca 398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  aacaaaagaaaaggaagcttccaaaagtaagctgagtccagtgttcccccaaaaggacca 777

                                                                        
Query: 399  gtggctgttcaaaggagcaggggtcctgcaacatctattccctctgcttacacagagaca 458
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 776  gtggctgttcaaaggagcaggggtcctgcaacatctattctctctgcttacacagagaca 717

                                                                        
Query: 459  tcttccaatagtaaactgaggccaagtcacaactgagagtcctggcacagctccccaaca 518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  tcttccaatagtaaactgaggccaagtcacaactgagagtcctggcacagctccccaaca 657

                                                                        
Query: 519  ttgctgccaccatctcccacagctctgtggccaaacctcagatagtggagtggcattgtt 578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  ttgctgccaccatctcccacagctctgtggccaaacctcagatagtggagtggcattgtt 597

                                                                        
Query: 579  ggcttacagacaattctactaggctccacccaacagcaacctagcaatagcttatattat 638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  ggcttacagacaattctactaggctccacccaacagcaacctagcaatagcttatattat 537

                                                  
Query: 639  tagttgctaccaggtgtgagccagttgtatataagagg 676
            ||||||||||||| |||||||||| |||||||||||||
Sbjct: 536  tagttgctaccagctgtgagccaggtgtatataagagg 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)