BAC Information

Click to search

BAC

Clone NameMSMg01-518H13
Chromosome7 (Build37)
Map Location 112,074,702 - 112,075,407
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668
Downstream geneOlfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518H13.T7 (MSMg01no518_h13.b1)MSMg01-518H13.TJ (MSMg01no518_h13.g1)
ACCAG589972AG589973
length755757
length of high quality
(start - end)		711 (45 - 755)682 (76 - 757)
definitionCHROMAT_FILE: MSMg01no518_h13.b1 PHD_FILE: MSMg01no518_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:53 2005CHROMAT_FILE: MSMg01no518_h13.g1 PHD_FILE: MSMg01no518_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTGTAGTTTGTAGAGCTGGACATTTCTTCTCTTTAAGAGTCATT
TGCTTCTTTGAATTCAAGTCTATCCTCCTATTTTGTATGGCAAGAATAGC
TTTATTTCATACTCAGGGTCCAGGTCTTTACACGTATATTTTAAATGTGT
TATAAAAAGAAGCTCTTATATTTTTAGAGAATAAACTTTTGAAAACCTAG
ATTTTTCCTTCTTTGGAATATATTTTAGTGCCATGAATGTGCTAAATATA
ACTATAGATCATTGTGGAGTCCAGAAACCTGACATGGAAAATTTGAGATA
AATTTCCCTGTACTGAGGAAGGCAAAGAAAGAGCTCTATTTGACTTGTCT
GTGATGCAATGGGCATTATGGGTAGATTTTTGTCACTCACTATGCATTGA
GAGATAGTGGGTGTTTCTGCACTTGTTGATTAGTTTTAAGTTGCAGGCAG
AATGCAGACCCACCAGTTCAGATCTCTACAAATATCCTGGCCCTTCTGAT
AAGGCAGCTTCAGAACCTGCTGGCTGTGTTAGGATCCAGACATTGAAGGC
ACATTCCAAACACAGAGACAGATTATCTTAAAACAATTACAGTGGCCACT
AGCTTAGTCACCATTTAGTGAGTTTCAGGAAATCTGATAAAATTTCACAG
GCTTTTGTTCTAGATTTAAAGATATGGTTTTTATATACTTTTCTATCTAA
AACAA

TCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCCACATAGCTCTTCTGCCTTCT
CTGTATCCTGCAAGGCTTGCTTCACACTCTGAACTGAGCTGATATCCAGG
GGGATGTCCAGGAAGGGATCATAGGAATATGAGGTGCCCTGGCAGTGGTG
ACACTTGATCTGAGACCTCCACCAGCCTCCAAATATGTCATGAATGGGTG
AGCTGTCCTCAGAGGTGGGTTCTGATTGTCTGTGCACTTGAAGGCAGGAT
TCATGCATTGTTTCCAAGGTGAACATGAGAAACTCATGGGCATCTTCCTG
CTTGCGCTTGTGGAAGGCAGAGGTCAAAATCTGGGAGGGCTTCATAACAT
CCCCTGAGTGGGTGTGCAGGAGACTCTGGGTCACATGGGCTTCCATAGCA
CACATCTTACAGCCTTCTGGGGAACAACAGGTTTGACTGTGCTCCTGGGA
CAGCATGTAGTCAGCTAGAGGTGGTGTGTGTGTCAAGCACTGCAGGGCTG
CATTCAGGTAGCAGCTGTTGCCTGTGTTCTGGAGCCCGCATCCTGGTCCT
TGGGGACTCTCCCAACTCAGACTGTGCTTTCCATTGGCAGCCAGCTCCTC
TACCACCTGGGCTTCATCCTGATGCAGCTCTGGGGCACTAGGAGGTGACA
TGGCTGGATCTGCTATGGGACAAGAACACAAAAAGTCTTTAGGGCATGCC
AGTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_h13.b1 MSMg01no518_h13.b1 CHROMAT_FILE:
MSMg01no518_h13.b1 PHD_FILE: MSMg01no518_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:53 2005
         (711 letters)



>mm_chr7_112074498_112075608
          Length = 1111

 Score = 1365 bits (706), Expect = 0.0
 Identities = 706/706 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctgtagtttgtagagctggacatttcttctctttaagagtcatttgcttctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gaattcatctgtagtttgtagagctggacatttcttctctttaagagtcatttgcttctt 851

                                                                       
Query: 65  tgaattcaagtctatcctcctattttgtatggcaagaatagctttatttcatactcaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tgaattcaagtctatcctcctattttgtatggcaagaatagctttatttcatactcaggg 791

                                                                       
Query: 125 tccaggtctttacacgtatattttaaatgtgttataaaaagaagctcttatatttttaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tccaggtctttacacgtatattttaaatgtgttataaaaagaagctcttatatttttaga 731

                                                                       
Query: 185 gaataaacttttgaaaacctagatttttccttctttggaatatattttagtgccatgaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaataaacttttgaaaacctagatttttccttctttggaatatattttagtgccatgaat 671

                                                                       
Query: 245 gtgctaaatataactatagatcattgtggagtccagaaacctgacatggaaaatttgaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gtgctaaatataactatagatcattgtggagtccagaaacctgacatggaaaatttgaga 611

                                                                       
Query: 305 taaatttccctgtactgaggaaggcaaagaaagagctctatttgacttgtctgtgatgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 taaatttccctgtactgaggaaggcaaagaaagagctctatttgacttgtctgtgatgca 551

                                                                       
Query: 365 atgggcattatgggtagatttttgtcactcactatgcattgagagatagtgggtgtttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atgggcattatgggtagatttttgtcactcactatgcattgagagatagtgggtgtttct 491

                                                                       
Query: 425 gcacttgttgattagttttaagttgcaggcagaatgcagacccaccagttcagatctcta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gcacttgttgattagttttaagttgcaggcagaatgcagacccaccagttcagatctcta 431

                                                                       
Query: 485 caaatatcctggcccttctgataaggcagcttcagaacctgctggctgtgttaggatcca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caaatatcctggcccttctgataaggcagcttcagaacctgctggctgtgttaggatcca 371

                                                                       
Query: 545 gacattgaaggcacattccaaacacagagacagattatcttaaaacaattacagtggcca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gacattgaaggcacattccaaacacagagacagattatcttaaaacaattacagtggcca 311

                                                                       
Query: 605 ctagcttagtcaccatttagtgagtttcaggaaatctgataaaatttcacaggcttttgt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctagcttagtcaccatttagtgagtttcaggaaatctgataaaatttcacaggcttttgt 251

                                                         
Query: 665 tctagatttaaagatatggtttttatatacttttctatctaaaaca 710
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tctagatttaaagatatggtttttatatacttttctatctaaaaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |