Query= MSMg01no519_a07.b1 MSMg01no519_a07.b1 CHROMAT_FILE:
MSMg01no519_a07.b1 PHD_FILE: MSMg01no519_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:37 2005
(292 letters)
>mm_chr7_110987934_110988624
Length = 691
Score = 507 bits (262), Expect = e-148
Identities = 280/286 (97%), Gaps = 1/286 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgatttttctttttctcatgtcctttaaaaccagatgttctgtttctcttcct 63
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgattattctttttctcatgtc-tttaaaaccagatgttctgtttctcttcct 262
Query: 64 tgagaagactcataaagcctcctatattagggggagatggaagaatgtttccccaaatct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgagaagactcataaagcctcctatattagggggagatggaagaatgtttccccaaatct 322
Query: 124 agaattagaaaatgaaaaacagaatgtatcatttgacttgtggtctaagcaagggacttg 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 323 agaattagaaaatgaaaaacagaatgtgtcatttgacttgtggtctaagcaagggacttg 382
Query: 184 aggataaatgtaggtagagctgtgggtggggcacaaaagacaggatataaaataaataca 243
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 383 aggataaatgtaggtagagctgtgggtggagcacaaaagacaggatataaaataaataca 442
Query: 244 tttctttaattgaagattgtgaaaagggtaaattaataaggatatt 289
|||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 443 tttctttaattgaagattgtgaaaggggtaaattaagaaggatatt 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space: 193006
Effective search space used: 193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no519_a07.g1 MSMg01no519_a07.g1 CHROMAT_FILE:
MSMg01no519_a07.g1 PHD_FILE: MSMg01no519_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:37 2005
(664 letters)
>mm_chr7_111171507_111172568
Length = 1062
Score = 1081 bits (559), Expect = 0.0
Identities = 636/663 (95%), Gaps = 6/663 (0%)
Strand = Plus / Minus
Query: 1 ccataaagagagaattaatggagaagctaatgtagaagaaaatgaagaagcatttctgaa 60
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 866 ccataa--agagaattaatggagaagctaatgtagaagaaaacgaagaagcatttctgaa 809
Query: 61 gagaaatgaaggagagtgtatttgggggaagaggagctaaggggatctgggcagaatgag 120
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 808 gagaaatgaaggagggtgtatttgggggaaggggagctaaggggatctgggcagaatgag 749
Query: 121 tgaagaatctatgctcaataggaaaaaaaaaagtaggtgtttccataggggagaaaagca 180
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgaagaatctatgttcaatagg--aaaaaaaagtaggtgtttccataggggagaaaagca 691
Query: 181 gctttaaccaggcaagttaccaacagtattctgtttgaaagggaaaccaatgcactggga 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 690 gctttaaccaggcaagttaccaacagtgttctgtttgaaagggaaaccaatgcactggga 631
Query: 241 aaatgccttccttacatttagaaacaaagaggccatcacagagaaatgtgtggatgggga 300
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 630 aaatgccttccttacgtttagaaacaaagaagccatcacagagaaatgtgtggatgggga 571
Query: 301 gggtgtggtgtctgcagtacaatggaatgagcatcaccagcaggttatggttactggcat 360
||||||||||||||||||||||||||| || |||||| ||||||||| |||| |||||||
Sbjct: 570 gggtgtggtgtctgcagtacaatggaaagaccatcactagcaggttacggttcctggcat 511
Query: 361 tgagagtctctgaatcatattagggaagatgacactgaagcagataaccttccttggtat 420
||||| |||||||||||||||||| |||||| |||| |||||||||||||||| ||||||
Sbjct: 510 tgagattctctgaatcatattaggaaagatggcactcaagcagataaccttccctggtat 451
Query: 421 gggaaaagaaagaaaatttgactatgtgtgggaaacatctgtagattggaagctggagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gggaaaagaaagaaaatttgactatgtgtgggaaacatctgtagattggaagctggagag 391
Query: 481 gaagattaccaatatttttgatgcagggcttttgtacacagctattgcctgaagaccaag 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 390 gaagattaccaatatttttgatgcagggcttctgtacacagctattgcctgaagaccaag 331
Query: 541 aaccagaagaggaatgagattgaagatactatacagaaag-ctgatagaatcggagtctg 599
||||||||||||||||||||||||| |||||||||| ||| |||||| |||| |||||||
Sbjct: 330 aaccagaagaggaatgagattgaaggtactatacag-aagactgataaaatcagagtctg 272
Query: 600 gaaggagtgatagtaataaaatctgaagtactgtgcctgtttttgaaacaggagagattc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaaggagtgatagtaataaaatctgaagtactgtgcctgtttttgaaacaggagagattc 212
Query: 660 ctg 662
|||
Sbjct: 211 ctg 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1062
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1052
Effective search space: 688008
Effective search space used: 688008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
