BAC Information

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BAC

Clone NameMSMg01-519J17
Chromosome7 (Build37)
Map Location 118,240,899 - 118,241,463
singlet/doubletsinglet
Overlap geneLOC100043221
Upstream geneWee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2
Downstream geneLOC100042658, LOC384658, Galntl4, LOC668399, LOC100042678, Usp47
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519J17.T7 (MSMg01no519_j17.b1)MSMg01-519J17.TJ (MSMg01no519_j17.g1)
ACCAG590838AG590839
length770761
length of high quality
(start - end)
69 (57 - 125)565 (66 - 630)
definitionCHROMAT_FILE: MSMg01no519_j17.b1 PHD_FILE: MSMg01no519_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:22 2005CHROMAT_FILE: MSMg01no519_j17.g1 PHD_FILE: MSMg01no519_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCGTAAACGACTACTATTCGGAGAAGAGCGCGGAATCAACCTTTACC
AATTCCATTGAGTCTCAACTCAATCCTAGTCAATCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATGTATATATATATAGAT
GTGTGTGTGGGGGTGGGGGGAGAGAGAGAGAGAAAGAAAAGAGAGAGAGG
GAGGGGCAGAGAAAAAAAAAAAAGAGAAGAGAAGAAGAAAGAGATAGAGA
GAAAGAGAGAGAAGAAGAGAAAAAAAAGGAGAGAAAGAAAGAAAAAAGAA
AAAGATATGAAAGAGAGAAAAAAAAAAAAAAGAAAGAAAGAGGAAAAATA
AGTGAAAAAGAGGAGGGAGACACACACATCAAAGAGAGGAGAGAGAGGGG
GGAACAAAAAGAAAAAAAATACACGGGGTAAGAGAGAAAGAGAGAGAGAA
AAAAGATAAAGAGAAAAAAAAAAAAATAGAAGAGAGGGTAAGTAGAGAGA
GAAAAAGAAAAAAAGAGGTTATAAGTGGAGGAAAGGAGAAAAAAAATGGG
CGGGTAGGGAGAGAGAGAAGAAAAAAAAACAGTTGCGAAGGGAAGGAAAA
AGAGTAGAGGTGGGGAGAAAACACAAAGGGTGGAAAAAAAAAAGGAGAGG
AGAAGAGGAGAAACGGAAGGATGGGGAAAGAGATATGGGAAGAGAGAAAA
AAAAAGAGGTATAACAAAAAGTCGAAAAAGAGAGAGATGAAAAGAAATAA
AAAAAGAAATGAGGAGAGAA
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGGTTGCTATTAAACTAAAAATGCCGACCTTTCCT
TAGCTATAAACATCCTGTATTTGTTGACAGTTGCATCTCAATATGGGTGA
TCAGGTAAAGGGTGTGTGGCACCAAAGAACTCCATACAGAAGGCCAACAC
TGGTGAAACAAGCAATGCTGTCAGAAGACTAATCTGTCTCTCTGTACTCT
TGTTTCCTATGTATCCATTTTCACATTCTGGCTGCTAGGCATCCTCCAGA
AGGGATAGTACTTGTCAGAACAAAAATAAAGATGCCTCTTTAGCTAATTA
ACCATATCTTTCTTAAGCTCCACTCTCTCCTCCTTTTGATTCTCAGGCAT
CATTTATATTAGAACTTCATAGTTTGTTTTAGAAAATGTTCTCTATTATC
TTCTAGTGAGAACATTTAAAAAGTTTGCCTCAGCCAGGTAGTGGTAGCAC
CTGCCTTTGATCCCAACACTTGGGAGGCAGAGGCAGGTAGATCTCTAAGT
TCAAGATCAGCTTGGTCTACAGAGCAAGGTCTAGGACAGCCAGAGCTACA
TAGATAAACCAACCCCAAAACAAACAAACAAACACCAAAAGAAAAAAGAA
AAAAAGTTTGTCTCTTTTCTATATGTTTTCACTAAATCATAAGCCAGTGA
TAAATCCAGCCAGATCTGGATGAGCACTGGTGAGAATGGCCCTAAACTAA
TGTAGATGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_j17.g1 MSMg01no519_j17.g1 CHROMAT_FILE:
MSMg01no519_j17.g1 PHD_FILE: MSMg01no519_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:22 2005
         (565 letters)



>mm_chr7_118240699_118241663
          Length = 965

 Score = 1069 bits (553), Expect = 0.0
 Identities = 562/565 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttgctattaaactaaaaatgccgacctttccttagctataaacatcctgtatttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggttgctattaaactaaaaatgccgacctttccttagctataaacatcctgtatttgtt 260

                                                                       
Query: 61  gacagttgcatctcaatatgggtgatcaggtaaagggtgtgtggcaccaaagaactccat 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacagttgcatctcaatatggctgatcaggtaaagggtgtgtggcaccaaagaactccat 320

                                                                       
Query: 121 acagaaggccaacactggtgaaacaagcaatgctgtcagaagactaatctgtctctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaaggccaacactggtgaaacaagcaatgctgtcagaagactaatctgtctctctgt 380

                                                                       
Query: 181 actcttgtttcctatgtatccattttcacattctggctgctaggcatcctccagaaggga 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcttgtttcccatgtatccattttcacattctggctgctaggcatcctccagaaggga 440

                                                                       
Query: 241 tagtacttgtcagaacaaaaataaagatgcctctttagctaattaaccatatctttctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtacttgtcagaacaaaaataaagatgcctctttagctaattaaccatatctttctta 500

                                                                       
Query: 301 agctccactctctcctccttttgattctcaggcatcatttatattagaacttcatagttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctccactctctcctccttttgattctcaggcatcatttatattagaacttcatagttt 560

                                                                       
Query: 361 gttttagaaaatgttctctattatcttctagtgagaacatttaaaaagtttgcctcagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttttagaaaatgttctctattatcttctagtgagaacatttaaaaagtttgcctcagcc 620

                                                                       
Query: 421 aggtagtggtagcacctgcctttgatcccaacacttgggaggcagaggcaggtagatctc 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtagtggtagcacatgcctttgatcccaacacttgggaggcagaggcaggtagatctc 680

                                                                       
Query: 481 taagttcaagatcagcttggtctacagagcaaggtctaggacagccagagctacatagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagttcaagatcagcttggtctacagagcaaggtctaggacagccagagctacatagat 740

                                    
Query: 541 aaaccaaccccaaaacaaacaaaca 565
           |||||||||||||||||||||||||
Sbjct: 741 aaaccaaccccaaaacaaacaaaca 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)