Query= MSMg01no519_k04.b1 MSMg01no519_k04.b1 CHROMAT_FILE:
MSMg01no519_k04.b1 PHD_FILE: MSMg01no519_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:24 2005
(593 letters)
>mm_chr7_57722327_57723320
Length = 994
Score = 996 bits (515), Expect = 0.0
Identities = 572/591 (96%), Gaps = 3/591 (0%)
Strand = Plus / Plus
Query: 5 gaattcatagtctgtttctcaaaagttaaaaatagaaaacaaaaacagaattatctgata 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcatagtcagtttctcaaaagttaaaaatagaaaacaaaaacagaattatctgaca 264
Query: 65 tggcaattatactctggatgtgccctaaacaatcaaaaaatggtgtcgagatgaaagact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggcaattatactctggatgtgccctaaacaatcaaaaaatggtgtcgagatgaaagact 324
Query: 125 tttatcctagtattgaccagagctgcattcgagagagatgcagtacacagataattcagg 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 325 tttatcctagtattgaccagagctgcattcgcgagagatgcagtacacagataatccagg 384
Query: 185 gg-ctcaccagaagaggaacagacaagccaactgcagcacatgt-tcggcaaatctgttt 242
|| |||||||||||||||||||||||||||||||||||||| || | | |||||||||||
Sbjct: 385 gggctcaccagaagaggaacagacaagccaactgcagcacaggtat-gacaaatctgttt 443
Query: 243 tccttgaaaggaagggagttctgaagcactctacagcaaggatgaaactctagggcatac 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 tccttgaaaggaagggagttctgaagcactctacagcaaggatgaaactctaggatatac 503
Query: 303 agagtggagtaagccagccggctactgacagacaagcactgcaattccagttgtgggaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agagtggagtaagccagccggctactgacagacaagcactgcaattccagttgtgggaag 563
Query: 363 ccgccagggcaggaggcaggaagtaaaagggccatgggtgctggtagacaacataaataa 422
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 564 ccgccagggcaagaggcaggaagtaaaagagccatgggtgctggtaggcaacataaataa 623
Query: 423 gcatgatgtcactgaatgagacagaagaaaatggtgacaatgttaaattctgttgtgtgt 482
|||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 624 gcatgatgccaccaaatgggacagaagaaaatggtgacagtgttaaattctgttgtgtgt 683
Query: 483 agtttagcactgtaaaaattaggtaacactgcctccagggaaagatttcttccctaaatg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agtttagcactgtaaaaattaggtaacactgcctccagggaaagatttcttccctaaatg 743
Query: 543 tctagaaaccagacttagcatcacttcccttgtgtctagattgtgtgtggg 593
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tctagaaaccagacttagcatcacttcccttgtgtctagattgtgtgtggg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space: 573672
Effective search space used: 573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_k04.g1 MSMg01no519_k04.g1 CHROMAT_FILE:
MSMg01no519_k04.g1 PHD_FILE: MSMg01no519_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:24 2005
(241 letters)
>mm_chr7_57911259_57911899
Length = 641
Score = 427 bits (221), Expect = e-124
Identities = 239/253 (94%), Gaps = 13/253 (5%)
Strand = Plus / Minus
Query: 1 tatcttcaaagaacagaaaacaaacaaacaaacaaacaaac-------------aaaatc 47
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 tatcttcaaagaacagaaaacaaacaaacaaacaaacaaacaaacaaacaaacaaaaatc 438
Query: 48 ctttaagaaccgaagcaggggataatgtcttatgactcttcccattgagggcattcttcg 107
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 437 ctttaagaaccgaagcaggggataatgtcttatgactcttcccatcgagggcattcttcg 378
Query: 108 aaaatgtgagaccatacagcatggtgtacactggaattgtgactctgccatgagggactg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaatgtgagaccatacagcatggtgtacactggaattgtgactctgccatgagggactg 318
Query: 168 ttgccctgtgacaggaagtccttcagatggaaggataatgtgaacttacaggaagttggt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgccctgtgacaggaagtccttcagatggaaggataatgtgaacttacaggaagttggt 258
Query: 228 cctcaccacacaa 240
|||||||||||||
Sbjct: 257 cctcaccacacaa 245
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
