Query= MSMg01no519_m17.b1 MSMg01no519_m17.b1 CHROMAT_FILE:
MSMg01no519_m17.b1 PHD_FILE: MSMg01no519_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:37 2005
(716 letters)
>mm_chr7_111790723_111791838
Length = 1116
Score = 1303 bits (674), Expect = 0.0
Identities = 691/704 (98%), Gaps = 12/704 (1%)
Strand = Plus / Plus
Query: 13 gaattcttatgtatatctgccctgcagcatgtctaaaacagttttgttggacttatccac 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcttatgtatatctgccctgcagcatgtctaaaacagttttgttggacttatccac 272
Query: 73 cgtatctcccaatctttctgtacaatcatccatgaaaatccctgagccttgtgagtgaac 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cgtatctcccaatctttctgtacaatcatccatgaaaatccctgagccttgtgagtgaac 332
Query: 133 ataagcatgtatagatactttccatttattggaaattaggctgagcactccacagtttct 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ataagcatgtatagatactttccatttattggaaattaggctgagcactccacagtttct 392
Query: 193 atttccccatttagtgaccagttaaacacctgtgttagtttccatctacagcaacaagct 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atttccccatttagtgaccagttaaacacctgtgttagtttccatctacagcaacaagct 452
Query: 253 tatttgatgagagttgagagatgtggtgatctatgggtgtagcaattagactaggctagc 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tatttgatgagagttgagagatgtggtgatctatgggtgtagcaattagactaggctagc 512
Query: 313 tggccagtaagtcacagggatcctcttgtttccagcttctgaatggtgggattacaggtt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tggccagtaagtcacagggatcctcttgtttccagcttctgaatggtgggattacaggtt 572
Query: 373 catgccaccactcctgactattttacattagtcccaaggatcataggattcttatgattg 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 catgccaccactcctgactattttacattagtcccaaggatcataggattcttatgattg 632
Query: 433 catgataagcattttcccaaataagccacgttccaactacagttttaagtaacttttact 492
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 633 catgataagcattttcccaaataagccacgttccaactacagttttaagtaacatttact 692
Query: 493 catttaagaatttcatacattatactctatttacatcatttttactcctttccatatcct 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 catttaagaatttcatacattatactctatttacatcatttttactcctttccatatcct 752
Query: 553 tccatgtctcatttcatctcaagttcacaaaatcttctttagttattgctacatacaaat 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tccatgtctcatttcatctcaagttcacaaaatcttctttagttattgctacatacaaat 812
Query: 613 acatatgtgtacatacatacatacatacatacatacatacatacatacatacctgtttta 672
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 813 acatatgtgtacatacatacatacatacatacatacatac------------ctgtttta 860
Query: 673 ggcaatcatactcttagggtttcatatgttcagcttccttgtgt 716
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ggcaatcatactcttagggtttcatatgttcagcttccttgtgt 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space: 780836
Effective search space used: 780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no519_m17.g1 MSMg01no519_m17.g1 CHROMAT_FILE:
MSMg01no519_m17.g1 PHD_FILE: MSMg01no519_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:37 2005
(495 letters)
>mm_chr7_111822324_111823222
Length = 899
Score = 915 bits (473), Expect = 0.0
Identities = 492/501 (98%), Gaps = 8/501 (1%)
Strand = Plus / Minus
Query: 1 aaccaagggatttttttcttctgtatgagttctttaaatgtattcattaattattcttta 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aaccaaggga-ttttttcttctgtatgagttctttaaatgtattcattaattattcttta 641
Query: 61 gaattgtgttggtttcatttaattcactcttgttggaaga-agtcattgtgaaaccagta 119
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 640 gaattgtgttggtttcatttaattcactcttgttggaagaca-tcattgtgaaaccagta 582
Query: 120 gtttatgtcttcatttattttcatgtttcttatgttgttgtattgggcagtgtgtaggat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gtttatgtcttcatttattttcatgtttcttatgttgttgtattgggcagtgtgtaggat 522
Query: 180 attgattgcatttttaaagcatattcaatcaaagaaagagcttgccacatcaagagggtg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 attgattgcatttttaaagcatattcaatcaaagaaagagcttgccacatcaagagggtg 462
Query: 240 taagttgtactgggcttaagatgtcattttcatactaagcaggaattcatggcagtagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 taagttgtactgggcttaagatgtcattttcatactaagcaggaattcatggcagtagaa 402
Query: 300 ttagtctcctgaaagtagaatactgcctataataatgatcagtatcaaaattcatgtcca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttagtctcctgaaagtagaatactgcctataataatgatcagtatcaaaattcatgtcca 342
Query: 360 ctagaaatatatagtgacaaagaaataacaagtaatcactctttaagccccaatctattt 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctagaaatatatagtgactaagaaataacaagtaatcactctttaagccccaatctattt 282
Query: 420 aggc-----actaaagtaacactcatagtatagcttacatttaggtatttgttactgtgg 474
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aggctatttactaaagtaacactcatagtatagcttacatttaggtatttgttactgtgg 222
Query: 475 ctatgagtggaaagcaagatt 495
|||||||||||||||||||||
Sbjct: 221 ctatgagtggaaagcaagatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 899
Length adjustment: 10
Effective length of query: 485
Effective length of database: 889
Effective search space: 431165
Effective search space used: 431165
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
