Query= MSMg01no519_o10.b1 MSMg01no519_o10.b1 CHROMAT_FILE:
MSMg01no519_o10.b1 PHD_FILE: MSMg01no519_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:46 2005
(684 letters)
>mm_chr7_108291710_108292793
Length = 1084
Score = 1237 bits (640), Expect = 0.0
Identities = 680/714 (95%), Gaps = 33/714 (4%)
Strand = Plus / Plus
Query: 4 ggaattctctttggcaaattccttctgtaatagaggcttaaagtgtagtcagttcagctt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ggaattctctttggcaaattccttctgtaatagaggcttaaagtgtagtcagttcagctt 250
Query: 64 taagcagttagtttttctgtgctattagggaaactatatacttgaagcctttttttcttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taagcagttagtttttctgtgctattagggaaactatatacttgaagcctttttttcttc 310
Query: 124 catctcattctctgagtaaggagacaaggtaactactatggcagaaagcccatcagaaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 catctcattctctgagtaaggagacaaggtaactactatggcagaaagcccatcagaaca 370
Query: 184 aaattgatggagttacttttatatttatgttgcttttaaaatgactttattgtattttgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaattgatggagttacttttatatttatgttgcttttaaaatgactttattgtattttgg 430
Query: 244 ttttttgtcatacataggtgttagaaatacaattggaaggaacaggctaacttttgttta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttttttgtcatacataggtgttagaaatacaattggaaggaacaggctaacttttgttta 490
Query: 304 agtaagatagtctaactaattttatatagtttaatttttaaagttgtaaagctgtgttat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agtaagatagtctaactaattttatatagtttaatttttaaagttgtaaagctgtgttat 550
Query: 364 aagaggaaattgtagatgtgagtaaatttggtctttctgggcaaatagatttgctagact 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aagaggaaattgtagatgtgagtaaatttggtctttctgggcaaatagatttgctagact 610
Query: 424 ttcatctttctatggctgttctgtagcacatttttaaaagaaatgagtaaa--------- 474
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttcatcttcctatggctgttctgtagcacatttttaaaagaaatgagtaaaaaataattg 670
Query: 475 ----ttcgacttctattccttttttctccagaacctgttcctgttaatgagtttaggggt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cttattcgacttctattccttttttctccagaacctgttcctgttaatgagtttaggggt 730
Query: 531 taggctggcatagcataggagtagaaagagggaagagtttaggccagagctgtggttttt 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 taggctggcatagcataggagtagaaagagggaagagtttaggccagagctgtggttttt 790
Query: 591 aaactcttgtagatagaactcccggttccctcctccctccctctcttcctatttgtttaa 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aaactcttgtagatagaactcccggttccctcctccctccctctcttcctatttgtttaa 850
Query: 651 aatacaggct--------------------gacctggaactcatgtttctcctg 684
|||||||||| ||||||||||||||||||||||||
Sbjct: 851 aatacaggctctcagtatgtatcccaggctgacctggaactcatgtttctcctg 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_o10.g1 MSMg01no519_o10.g1 CHROMAT_FILE:
MSMg01no519_o10.g1 PHD_FILE: MSMg01no519_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:46 2005
(652 letters)
>mm_chr7_108425675_108426726
Length = 1052
Score = 1187 bits (614), Expect = 0.0
Identities = 623/626 (99%)
Strand = Plus / Minus
Query: 1 agagaaaacagtgtgggaaagagagtgagatgtaaggtggccattttctacaaggttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agagaaaacagtgtgggaaagagagtgagatgtaaggtggccattttctacaaggttttg 567
Query: 61 acaagcctctaatttctaaactcagttatgtaaacacttggctactatggagaagaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acaagcctctaatttctaaactcagttatgtaaacacttggctactatggagaagaatga 507
Query: 121 aggtgaggcttatcgatcttgctcctttgcacgtgcctgaatctctcttgtccatggagt 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 506 aggtgaggcttatcgatcttgctcctttgcacgtgcctggatctctcttgtccatggagt 447
Query: 181 gtcgccattctcggaggctgagagctcttccactagcaccgatgggaaaacaccgattcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtcgccattctcggaggctgagagctcttccactagcaccgatgggaaaacaccgattcg 387
Query: 241 accactgaactccccttcccagaagccatcatcatcttggttttctttgttcaagatgcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 accactgaactccccttcccagaagccatcatcatcttggttttctttgttcaagatgcg 327
Query: 301 aataattgctccctcgggaaaggacagctcatcatctgtctggccctcataatcataaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aataattgctccctcgggaaaggacagctcatcatctgtctggccctcataatcataaag 267
Query: 361 tgctttcacaaaacagactggaagcaagagaaagacaaactggtaagagacaggcaggcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgctttcacaaaacagactggaagcaagagaaagacaaactggtaagagacaggcaggcg 207
Query: 421 cactgcttttgtccttgttttgaaagaaggtcttctctgtagcccagcctgttctcaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 206 cactgcttttgtccttgttttgaaagaaggtcttctctgtagcccagcctggtctcaaac 147
Query: 481 ttgcaataagcctcctgcttcaaactcccaactacagaagagcaggtgtacccataacgc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttgcaataagcctcctgcttcaaactcccaactacagaagagcaggtgtacccataacgt 87
Query: 541 gtctagcaagatggactgatttcacaaccacccttgcttcacgacaactagtgagcatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gtctagcaagatggactgatttcacaaccacccttgcttcacgacaactagtgagcatga 27
Query: 601 cacgagacagggtaagttgtaagtca 626
||||||||||||||||||||||||||
Sbjct: 26 cacgagacagggtaagttgtaagtca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
