BAC Information

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BAC

Clone NameMSMg01-520E20
Chromosome7 (Build37)
Map Location 93,566,705 - 93,567,410
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1
Downstream geneOlfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520E20.T7 (MSMg01no520_e20.b1)MSMg01-520E20.TJ (MSMg01no520_e20.g1)
ACCAG591366AG591367
length758752
length of high quality
(start - end)		710 (49 - 758)674 (79 - 752)
definitionCHROMAT_FILE: MSMg01no520_e20.b1 PHD_FILE: MSMg01no520_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:18 2005CHROMAT_FILE: MSMg01no520_e20.g1 PHD_FILE: MSMg01no520_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCATATCCTTGTTTTTAATAGCTGAATAGTATTCCAGCTGG
TATTCTTAATTCATGTGTTACAATAAATTTACATTCATCTGTGAGGTTTA
TTTTTCTGTGAACTTTCAATTTGTTAGCAATATTCACATCTTAACAAATG
TATAACTTCATTAATATTGTTTTTAGGCTCATATTACTGAGAATTATAAA
TGGTCAACTGATGTATTTGGGACATACATTCATTAGTCTTTTAGACAGGC
CTTTGTATAATGAGAAAATATTATTTTATAGTCTAATATCACTTAGAATT
ATTTTGGAGTGTGTGAAATATTGGAATTTGTTAATTTATAATATTCAAAC
TGTTTCACTGATACATAAATTCACTGTACATAGAGAACTGGATTCTAAAG
AAATAGTTTCTTTCATACAGATCATGTACTTTGCCATTCATCCCAGTCTA
ATTCACTATCCTCAGGATTCTGCTCCCTTGGCCTTATCCCAAGAGCCTTC
TTCATTCCACCAATGTTCCTTCTGATTTTTATATGCTTTTAAGGATTCAA
GTTCACACAAATTAGAGACAATGTATATACCTTATATTATGGAATATGAT
AACTTATAGTTGAATCTGTTTTCTAGAAAACAACATAATCTCATTTGTCT
TGATAGCTAAATAAAATTCCATTGTATATATACACCAATTCACTTTCCAC
TAATTCCT

NTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTAGCTCTGTACCCCAT
TTTTTAATAGGCTTATTTCGTTTTCTGGAGTCTAACTTCTTGAGTTCTTT
ATATATATTGGATATTAGTCCCCTATCAGGTTTAGGGTTGGTAAAGATCT
TTTCCCAATCTGTTGGTGGCCTATTTGTCTTATTGACAGTGTACTTTGAC
CTTGCTGTGGTGTGAGTACTATGGTCTGATGTTCCCAAGTAGTCTTGGTT
TCTGTAGATAAGATTCTTGCATTTGCCTGTTGCCATCTGGTGATCTCTGG
TGTTAGATATGTGCTGTCTCTGGCTGGAGCTTGTTCCTCATGTGGGTCTG
CAAGCCTGTGTTAGCACTCCTGGGAGATCATCTCTGTCCTTGCAAGTCCA
GTACACAGAAGGCTGCGGAACAGCCTCACCTCCTGCAGATGGAGGCCAGA
AGGTCCTGGTTTAGCTGTTCTACAGCTTCTGAGGCCAGGGTGCTACTGGC
TACTCCCGCCTCAGACAGTCACTGGATTGAAAATGGCGATAGATCTCCCC
TGTGTCCTGGAGTCAAAGCACTCCCTAAAGACAAGCTCTCCCCTGGCAAG
AACAGTGCACCATTATTGTAAACTTTTAATTAATAAAATTAAGATAACTC
CTCAAAAGGTGGCATATTTTTACAGCTTTGACTGCCAAACTTAATGTTTA
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_e20.b1 MSMg01no520_e20.b1 CHROMAT_FILE:
MSMg01no520_e20.b1 PHD_FILE: MSMg01no520_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:18 2005
         (710 letters)



>mm_chr7_93566586_93567695
          Length = 1110

 Score = 1268 bits (656), Expect = 0.0
 Identities = 694/708 (98%), Gaps = 4/708 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcatatccttgtttttaatagctgaatagtattccagctggtattcttaattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gaattcatcatatccttgtttttaatagctgaatagtattccagctggtattcttaattc 766

                                                                       
Query: 65  atgtgttacaataaatttacattcatctgtgaggtttatttttctgtgaactttcaattt 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 atgtgttataataaatttacattcatctgtgaggtttatttttctgtgaactttcaattt 706

                                                                       
Query: 125 gttagcaatattcacatcttaacaaatgtataacttcattaatattgtttttaggctcat 184
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 705 gttagcaatattcacatcttcacaaatgtataacttcattaatattggttttaggctcat 646

                                                                       
Query: 185 attactgagaattataaatggtcaactgatgtatttgggacatacattcattagtctttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 attactgagaattataaatggtcaactgatgtatttgggacatacattcattagtctttt 586

                                                                       
Query: 245 agacaggcctttgtataatgagaaaatattattttatagtctaatatcacttagaattat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agacaggcctttgtataatgagaaaatattattttatagtctaatatcacttagaattat 526

                                                                       
Query: 305 tttggagtgtgtgaaatattggaatttgttaatttataatattcaaactgtttcactgat 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 525 tttggagtatgtgaaatattggaatttgttaatttataatattcaaactgtttcagtgat 466

                                                                       
Query: 365 acataaattcactgtacatagagaactggattctaaagaaatagtttctttcatacagat 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atataaattcactgtacatagagaactggattctaaagaaatagtttctttcatacagat 406

                                                                       
Query: 425 catgtactttgccattcatcccagtctaattcactatcctcaggattctgctcccttggc 484
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 405 catgtactttgccattcatcccagtctaattcactat--tcaggattctgctcccttggc 348

                                                                       
Query: 485 cttatcccaagagccttcttcattccaccaatgttccttctgatttttatatgcttttaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 347 cttatcccaagagccttcttcattccaccaatgttccttctgatttttatatgctcttaa 288

                                                                       
Query: 545 ggattcaagttcacacaaattagagaca--atgtatataccttatattatggaatatgat 602
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 287 ggattcaagttcacacaaattagagacaacatgtatataccttatattatggaatatgat 228

                                                                       
Query: 603 aacttatagttgaatctgttttctagaaaacaacataatctcatttgtcttgatagctaa 662
           |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 227 aacttagagttgcatctgttttctagaaaacaacataatctcatttgtcttggtagctaa 168

                                                           
Query: 663 ataaaattccattgtatatatacaccaattcactttccactaattcct 710
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ataaaattccattgtatatatacaccaattcactttccactaattcct 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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