BAC Information

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BAC

Clone NameMSMg01-521A20
Chromosome7 (Build37)
Map Location 14,247,725 - 14,248,354
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267
Downstream geneLOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521A20.T7 (MSMg01no521_a20.b1)MSMg01-521A20.TJ (MSMg01no521_a20.g1)
ACCAG591937AG591938
length789766
length of high quality
(start - end)		625 (48 - 672)621 (78 - 698)
definitionCHROMAT_FILE: MSMg01no521_a20.b1 PHD_FILE: MSMg01no521_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:16 2005CHROMAT_FILE: MSMg01no521_a20.g1 PHD_FILE: MSMg01no521_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:16 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGAGGGTCCCCTAAACCTCCTAATTTTAGAGGATGCTTGTAT
CCATTCTTACTGCTGGCCATCAGAATTTCAGTCCTTTTCCTTCACACAAT
ACTAGATCAGGTTCACCTCTCCCTCCCAGTCCCCCCATACACTTTCCCTC
CCAGGTTCCTCCCTTCTGCTTCCTGAGAGATAAACACTCAGAGGTCAAAT
TTATTTTTGAATAATTGCATCTTTCAGTTTTTGTCTGGCTGCATTTTTAC
TTTTTATTGATAAGTATTTTTCTCCATTCCTTCAGGGAAGCAGGTAGGCT
GAGAGCAGATTTTTGGCTTTCTCTCTGCTTTTCTAGATCCTATGACCAAT
ATTCACCTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTGTTGTA
ATGGGTTCTCATTCTTAACTGAGTGATAACTGTAAGCTCACCTTTTTCAA
GTCTTCATAGTATAGTACCAAGAAGTTGTCCCATTCTCTCATGGACAGCC
AGCCACGGACATGCTCAAACCATGATCCATATATGACTGTGTACAGGGAG
AAGTAGAGTCTCAATTACAAAGTAATAACACAGGGTCTGCTTGACTTTCT
TCATTTTCTGAAAGCAGCAGCAGAAAGCTTCACTAAGAAAAATCTAACTA
GTCTGTATTTATAGCATTAAACATGATGTTCGAGGGTNACACNGATATAT
AGAACTGATAAAATCAGTTCATTATCAAACTCATTACCC

NTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAACCTAAGCTATCTCTC
ACTTTGTCTTTAAAAAAAAATACTCTGAGAACTGGAACTGGGGAGAGTCC
AGAGTCTCTATGGTGGTGAATCTATCTGAAACTCTTAACAGTAAGTGACG
TGGAGCCTGAAATGCCACCTACTGTAGGCAGGTAGGATTCCTAGTGGAGG
GATAAGAATAGCAACCCATTCAGAATACCTTTAACCCCAAATGTGTCCTA
ACCTGAAGATGTCCAGAAACAAAGATGGAGCAGAGATGGAAAAAATGGGC
AATAATTGACTAGCCAAAATTGAGACACACAGCATGGGCAAGAAACAATC
CATGACACTATTACTCTGAAATGCCTGCTTACAAGAGCCCAGAATAAGTG
TACTCTGATAGGCTCCACCCAGCAGCTGATTAAAAGAGATGTATAAATCC
ACAGCCAAACATTAGTTAGAGCTCTGGAAGTCTTTTGGGAATGTTTGAGA
AAGATTTGAGGGACCCAACGGGGTTAAGAACTCCAGATGAAGACCAGAAG
AGTCAACTAACCTGGACCTTTTAGCCCTCTCAGAAACTGAACCACCAACC
AAAAAGCTATCATGAGCTAGATCTAGGGATCCTGCACATATGTAGCAGAT
GTGCAGCTTGGTCTTTGAGCANGTCTCCCAACAACTGGAGCTGGGTCTCT
CCATGAACGTGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_a20.b1 MSMg01no521_a20.b1 CHROMAT_FILE:
MSMg01no521_a20.b1 PHD_FILE: MSMg01no521_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:16 2005
         (625 letters)



>mm_chr7_14247714_14248738
          Length = 1025

 Score = 1172 bits (606), Expect = 0.0
 Identities = 620/630 (98%), Gaps = 9/630 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgagggtcccctaaacctcctaattttagaggatgcttgtatccattcttact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gaattcttgagggtcccctaaacctcctaattttagaggatgcttgtatccattcttact 582

                                                                       
Query: 65  gctggccatcagaatttcagtccttttccttcacacaatactagatcaggttcacctctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gctggccatcagaatttcagtccttttccttcacacaatactagatcaggttcacctctc 522

                                                                       
Query: 125 cctcccagtccccccatacactttccctcccaggttcctcccttctgcttcctgagagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cctcccagtccccccatacactttccctcccaggttcctcccttctgcttcctgagagat 462

                                                                       
Query: 185 aaacactcagaggtcaaatttatttttgaataattgcatctttcagtttttgtctggctg 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaacactccgaggtcaaatttatttttgaataattgcatctttcagtttttgtctggctg 402

                                                                       
Query: 245 catttttactttttattgataagtatttttctccattccttcagggaagcaggtaggctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 catttttactttttattgataagtatttttctccattccttcagggaagcaggtaggctg 342

                                                                       
Query: 305 agagcagatttttggctttctctctgcttttctagatcctatgaccaatattcacctttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agagcagatttttggctttctctctgcttttctagatcctatgaccaatattcacctttt 282

                                                                       
Query: 365 gttgttgttgttgttgttgttgttgtt---------attgttgttgtaatgggttctcat 415
           |||||||||||||||||||||||||||         ||||||||||||||||||||||||
Sbjct: 281 gttgttgttgttgttgttgttgttgttgttgttgttattgttgttgtaatgggttctcat 222

                                                                       
Query: 416 tcttaactgagtgataactgtaagctcacctttttcaagtcttcatagtatagtaccaag 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tcttaactgagtgataactgtaagctcacctttttcaagtcttcatagtatagtaccaag 162

                                                                       
Query: 476 aagttgtcccattctctcatggacagccagccacggacatgctcaaaccatgatccatat 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 aagttgtcccattctctcatggacagccagccacggacatgctcaaaccatgatccatat 102

                                                                       
Query: 536 atgactgtgtacagggagaagtagagtctcaattacaaagtaataacacagggtctgctt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 atgactgtgtacagggagaagtagagtctcaattacaaagtaataacacagggtctgctt 42

                                         
Query: 596 gactttcttcattttctgaaagcagcagca 625
           ||||||||||||||||||||||||||||||
Sbjct: 41  gactttcttcattttctgaaagcagcagca 12


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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