BAC Information

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BAC

Clone NameMSMg01-521D03
Chromosome7 (Build37)
Map Location 52,693,945 - 52,694,497
singlet/doubletsinglet
Overlap geneGys1
Upstream geneLrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2
Downstream geneFtl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521D03.T7 (MSMg01no521_d03.b1)MSMg01-521D03.TJ (MSMg01no521_d03.g1)
ACCAG592047AG592048
length746746
length of high quality
(start - end)		621 (51 - 671)553 (79 - 631)
definitionCHROMAT_FILE: MSMg01no521_d03.b1 PHD_FILE: MSMg01no521_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:27 2005CHROMAT_FILE: MSMg01no521_d03.g1 PHD_FILE: MSMg01no521_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCTGACAAATGGAGATTCTCCACAGATACTTAAAAGTGA
CACTCATACAAGAATTTATCAGGGCCCAAGAAATAGGGAGTTTGTGGTAT
TGCATTATTCATGAGAAGGTCTGCTAGAGCAGAACCCCTGGTGGTGGGCT
TAACAATACACTAGCTTTACACCTGGCTCCCTTCTTAATGGCAGCAGCCT
GGTCCCGCCTTCTTTTGATGTCTACATTCCTTTTGTATTGTATCACTGTA
ACTCGGTGGATGTATCTCGCCTGGTTTCTTGTTATTCTTCTGTATAAAAA
GTTCAATGCCCGACTTGACAAATTACATTCAGATTCTACACAATCTCCTG
TGTGCATATGTCTGTCATTTGTCGACTCCTTGACCATCTGCAACTAGAGA
CCCGTCCTAATCAGACGAGGGACCCAAGAGGGTCTGTGGCACCGGGTGTG
GCGGCGCACACCTTTAGTCCCAGCACTTGGGAGACAGAGGCAGGTGGATT
TCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAA
GGCTACACAGAAAAACTCTGTCTTTAAAAAAAAAAAAAAAAGGTAGGATA
GATAGTATAGTACCTTCTCTAAGGTTTCCAAATGAATATGACTGGACCCT
ATGGATGTAATTTTCATCTGATAGTTTTCATGATTGTTCTTGTTGG

NNCCTCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAGTTGCTGTCTACTTTAA
TATCCATTACCGTTAAGCACTCAGGGTAACTTTTGATACTTACCAACCTT
GAGTTGGTTTCAGAACCAGAAATCTGGGCTTTCCCCACCCCAAACCCATT
CTAGAATTTTTAAGAGAAGTTTTTAGGAGACTTAATTGGGATGCCTTAGG
ACAAAAAAGAGCTACACGTGCGTTCAAGGAAATCTGGGAGTTTTGGTCCT
GTTTTGTGCCCATAAAAGTTCTACTACCGCTGATTGAAATGCTGAGTCTT
AGCCGGGTGGTGGTGGCATGTACCTTTAATCTAGGGAGGTAGAGACAAGC
AGATCCCTGAGTTCAGGGCCAGCCTGGCCTACAAAGTGATTTCCAGGACA
GCCAGTGCTATTACACAGAGAAAATCTGTCTTGAAAAACCAAAAGAAGCC
GGGCAGTAGTGGCCCACGCCTTTAATCCCAGCACTCCAGAGGCAGAGGCA
GGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGG
ACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAA
AAAAAAATAACCTAACTAACCAACTAAAAAAGACCAATTCCCTGCAGTAT
TGACCAGGGCTTGGGGTGTTGATCCTCCCAGTTTCGCGTTGCCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_d03.g1 MSMg01no521_d03.g1 CHROMAT_FILE:
MSMg01no521_d03.g1 PHD_FILE: MSMg01no521_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:27 2005
         (553 letters)



>mm_chr7_52693745_52694697
          Length = 953

 Score = 1038 bits (537), Expect = 0.0
 Identities = 549/553 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggagttgctgtctactttaatatccattaccgttaagcactcagggtaacttttgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggagttgctgtctactttaatatccattaccgttaagcactcagggtaacttttgata 260

                                                                       
Query: 61  cttaccaaccttgagttggtttcagaaccagaaatctgggctttccccaccccaaaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaccaaccttgagttggtttcagaaccagaaatctgggctttccccaccccaaaccca 320

                                                                       
Query: 121 ttctagaatttttaagagaagtttttaggagacttaattgggatgccttaggacaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctagaatttttaagagaagtttttaggagacttaattgggatgccttaggacaaaaaa 380

                                                                       
Query: 181 gagctacacgtgcgttcaaggaaatctgggagttttggtcctgttttgtgcccataaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagctacacgtgcgttcaaggaaatctgggagttttggtcctgttttgtgcccataaaag 440

                                                                       
Query: 241 ttctactaccgctgattgaaatgctgagtcttagccgggtggtggtggcatgtaccttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctactaccgctgattgaaatgctgagtcttagccgggtggtggtggcatgtaccttta 500

                                                                       
Query: 301 atctagggaggtagagacaagcagatccctgagttcagggccagcctggcctacaaagtg 360
           |||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||
Sbjct: 501 atctcgggaggtagagacaagcagatccctgagttcagggcaagcctgttctacaaagtg 560

                                                                       
Query: 361 atttccaggacagccagtgctattacacagagaaaatctgtcttgaaaaaccaaaagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttccaggacagccagtgctattacacagagaaaatctgtcttgaaaaaccaaaagaag 620

                                                                       
Query: 421 ccgggcagtagtggcccacgcctttaatcccagcactccagaggcagaggcaggcagatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccgggcagtagtggcccacgcctttaatcccagcactccagaggcagaggcaggcagatt 680

                                                                       
Query: 481 tctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctatacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctatacag 740

                        
Query: 541 agaaaccctgtct 553
           |||||||||||||
Sbjct: 741 agaaaccctgtct 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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