BAC Information

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BAC

Clone NameMSMg01-521D13
Chromosome7 (Build37)
Map Location 132,521,898 - 132,522,505
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628779, EG545999, LOC670828, 4933440M02Rik
Downstream geneLOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521D13.T7 (MSMg01no521_d13.b1)MSMg01-521D13.TJ (MSMg01no521_d13.g1)
ACCAG592067AG592068
length762754
length of high quality
(start - end)
652 (68 - 719)517 (128 - 644)
definitionCHROMAT_FILE: MSMg01no521_d13.b1 PHD_FILE: MSMg01no521_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:29 2005CHROMAT_FILE: MSMg01no521_d13.g1 PHD_FILE: MSMg01no521_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTCAAAAGTCCACAGCAAGAAGATGGTGTGGACAACCCCCATAG
GATTCTGTCACTCGCTCCTGCCACTTCTCCAGATGACAGGGCCCCATCTC
CATGAGGAGTCAGAAAAATAAGAGGACAGAGCAGCCAATGGCAGGAAAGA
CAGACACCAAGGATTTTTCTGTTTCCCTGGGCCTCTGTGGACTCTGGCCA
CATGAATTATTCACCAGGGAGTCAGCTGGACATAGTTAGTGTCGTAATTT
TCAATTTTCCTAATGCCAACCAATTCTCTGCTGAAAACGTCTCAATTATT
AATGTTTCTAAAACAATATTTGTTTTCTCTGCACCTAGCAACAAGCAGAA
GTCTCACAGCTAAGATCCTGCTTGGAGCTCCCCAGAGAGAAGCTGGGCAG
GGGTCAGGAGCGCTCCAGATTGCAACAACTGCCGGGTTCCTATGGAGCCT
ACGTGGCAAGGAGGTCTTGAAGGTTTCCCAATATCCATGACTCCAGGAAC
AAAAGAAGCTGCAACAATAAAAAGCAAAACTGAGCGCCCAGCTCCTCCAT
GCTGAGTGTAGCCATAGGCTTTCACTTGCTTCCTTCCTTCTTACCAGTTC
ACCCTCCCAACCCCTCCCCCAACCCCCATATATGGTTCCTCATTCCCTTT
TTCAGTAAAGAGTCTGAGGCCCAACCCAAGGGCATGTCCATAAAGCACAG
GGGACAGAGAGA
CCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGGGATTTTTCAGGAGGTATATAAAT
GTTAGGGCCCTGAGAGGAAGGGCTGTTGATGGCTTATTGGTTGGTTGTTG
GTTGTTGTTGACTGAGGTTTCTTAAGGTGAGTGGTTCACAAAAAAAGAAA
CAACCAGAAGAAGAAATTAGAGATCCTAATGGCAAAGATCCAACCTGCTC
CAAGGAACTCTATAACCTAAATCAGCAGGAAATAGTCTAATGATAATTTT
GCCCTGCTTTCTGATGCCTCTCTCTTCTTTCTTCCCTATCCTTTTTTCTC
TCTTATCTAGGGGGTTGAAAAGGTGGAGAAGGGTGGAAGAAAAGAAAGAG
CTGACAAAGTAGTAAAGACCAGCTACATAAAGGCCATAGCCAGTCCTGGT
TGTGGGAGCTTGATATGGCCTGCCCAGCAGATAATGAAGATTTCCAGACT
ATTAATCACCTCCACCTCTCAGCTTTCTGAGTGGTAAAACAGGTTTTACA
TCCTTTCCTTTGAAAGGACAATTCTGTATACTTAATATCCTGGTTTCCAT
GGAGATCTGTGGGTGTAAGGACCTTCAAACTTCCAAGGAATCCAAAATCA
AAAGAGAAAGAAGGGAAAGATTTACTGGTTTTTTTGTGTGTTGTGGTGCA
AAGTGAAGCGGAAATCTCTCATTTCTTTGGAGTCTCAGTTGTGTCATGCG
ATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_d13.b1 MSMg01no521_d13.b1 CHROMAT_FILE:
MSMg01no521_d13.b1 PHD_FILE: MSMg01no521_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:29 2005
         (652 letters)



>mm_chr7_132521698_132522749
          Length = 1052

 Score = 1098 bits (568), Expect = 0.0
 Identities = 598/608 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcaagaagatggtgtggacaacccccataggattctgtcactcgctcctgccacttc 60
           ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 acagccagaagatggtgtggacaacccccataggattctgtcactcactcctgccacttc 260

                                                                       
Query: 61  tccagatgacagggccccatctccatgaggagtcagaaaaataagaggacagagcagcca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 261 tccagatgacagggccccatctccatgaggagtcagaaaaataagaggacagagaaacca 320

                                                                       
Query: 121 atggcaggaaagacagacaccaaggatttttctgtttccctgggcctctgtggactctgg 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 atggcaggaaagacagacaccaaggatttttctgtttccctgagcctctgtggactctgg 380

                                                                       
Query: 181 ccacatgaattattcaccagggagtcagctggacatagttagtgtcgtaattttcaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ccacatgaattattcaccagggagtcagctggacatagttagtgtcgtaattttcaattc 440

                                                                       
Query: 241 tcctaatgccaaccaattctctgctgaaaacgtctcaattattaatgtttctaaaacaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctaatgccaaccaattctctgctgaaaacgtctcaattattaatgtttctaaaacaat 500

                                                                       
Query: 301 atttgttttctctgcacctagcaacaagcagaagtctcacagctaagatcctgcttggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgttttctctgcacctagcaacaagcagaagtctcacagctaagatcctgcttggag 560

                                                                       
Query: 361 ctccccagagagaagctgggcaggggtcaggagcgctccagattgcaacaactgccgggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ctccccagagagaagctgggcaggggtcaggagcgctccagattgcaacaactgctgggt 620

                                                                       
Query: 421 tcctatggagcctacgtggcaaggaggtcttgaaggtttcccaatatccatgactccagg 480
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctatggaacttacgtggcaaggaggtcttgaaggtttcccaatatccatgactccagg 680

                                                                       
Query: 481 aacaaaagaagctgcaacaataaaaagcaaaactgagcgcccagctcctccatgctgagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaaaagaagctgcaacaataaaaagcaaaactgagcgcccagctcctccatgctgagt 740

                                                                       
Query: 541 gtagccataggctttcacttgcttccttccttcttaccagttcaccctcccaacccctcc 600
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 gtagccataggctttcacttgcttccttccttcttaccagatcaccctcccaacccctcc 800

                   
Query: 601 cccaaccc 608
           ||||||||
Sbjct: 801 cccaaccc 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)