BAC Information

Click to search

BAC

Clone NameMSMg01-521J01
Chromosome7 (Build37)
Map Location 77,057,007 - 77,200,025
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384741, EG665410
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521J01.T7 (MSMg01no521_j01.b1)MSMg01-521J01.TJ (MSMg01no521_j01.g1)
ACCAG592331AG592332
length738740
length of high quality
(start - end)		684 (52 - 735)657 (84 - 740)
definitionCHROMAT_FILE: MSMg01no521_j01.b1 PHD_FILE: MSMg01no521_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:56 2005CHROMAT_FILE: MSMg01no521_j01.g1 PHD_FILE: MSMg01no521_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,199,346 - 77,200,025)(77,057,007 - 77,057,663)
sequence
NNNNNAACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGGGGATCTTACTTACTTCTGGCCTCCTTGAGCACCAG
ACACACATTTGCTATTTATACATACATGCTAGCAAAATATTCATTCACAT
AAACAATAGCAAACTAAATGCATTAGAAGAATTAGGCTCGAGAATTGATG
TTTCCTACTGCTCACAATCATCTGTGATATATTGTTTGATTGACTGCTGG
TTTATGGAGATGGGGACTGAGACTTTTGGAGCACATGGAATCTGGGGTAA
AGTGTTGCATGGGATCCTAGTCCCATTCAGATGTCTAGCTAGGCTCATTT
CTCTTATTCTCTGATTCCAATGACTTAAAATAGCATTTAAAAAGTTAGTC
ATTGCAAATGAGGAGTAGAAAGGGCTTGATACCTTAAAAAAATATTGCAC
CAAGCAGGCCATATGTAAATATTCAGAAGAATGTGGCACAAATAACCCTT
TCCAAACACAGTAAGTTGCTAACATTAATTGCCTTAAACAATCAACTTTC
CCTAAATAAGACAACTCTACTTTTAGTCAGGCTTTCGACCTTTAATTCCA
TAATGGAACTGATATGCCACTGAGAAATGATCATTTGGAGTCCACGAACT
AGAATTGTTTTTACATTAAGAATAAAGAGTTTACCTAAAGGTGCTACGGA
GAACTCTGTATCTGTCAGGTACACAGGCATCTCTGATN

NNNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCAAATACTGAAGAC
TGCAGATTGATAAGGGCTATAGAGGGCCCACCATACATTATCACAGGTAA
AGAGGAGTCAGAGACTTCTAGAGACCAGCACAGTCTGGGTGAAAGAGCAC
AAGCAAGGTGTCAAGGGCCCGCTTTGGGGTGTCAATACTCACAGGAGCTG
GGACTATCTCTGAAATCTGCCTCCTTGATATCCTTAATTGAAGGGCAGAG
AGCTGAGACTTGATTCCAAAATGATGGGGACCTTTCAGTTAATGGTCAGT
GAAGAGTCTTTGAGACCTCAGAATAAGGGTCTGAAAAGACGAGGTGAAGC
TGGAGTATCACCAAGATGGTGCGTCTTTACAGTCACAAACAGGATGTAGG
GAAGGGAGAATGGCCATATCTGAGTCAGGAGAGGCTTAGGGCCTGCCCTC
CCCCTTGCTGACTTAACCTTTCATTACTGAGAAAGAAACCCAAACACAGG
ATAATTTGATGAACCACACATACCCATAGGCCTCAGACTTTGAATAGAGA
AACAATGGACCAGGAGAAGAAAGCAGAAGCCTCTCAAGGATTGTATCTGA
AGAGGGAAACAAAGAAGCCAGCAAGACCCGAGAAAGGAACTGGCGAGACA
CACCAATAGGCACAAAAGGGAAGGCAGGAGAGGACAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_j01.b1 MSMg01no521_j01.b1 CHROMAT_FILE:
MSMg01no521_j01.b1 PHD_FILE: MSMg01no521_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:56 2005
         (684 letters)



>mm_chr7_77199029_77200112
          Length = 1084

 Score = 1199 bits (620), Expect = 0.0
 Identities = 665/680 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggggatcttacttacttctggcctccttgagcaccagacacacatttgctat 64
           ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 997 gaattcctggggatcctacttacttctggcctccttgagcaccagaaacacatttgctgt 938

                                                                       
Query: 65  ttatacatacatgctagcaaaatattcattcacataaacaatagcaaactaaatgcatta 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 ttatacatacatgttagcaaaatattcattcacataaacaatagcaaactaaatgcatta 878

                                                                       
Query: 125 gaagaattaggctcgagaattgatgtttcctactgctcacaatcatctgtgatatattgt 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaagaattaggcttgagaattgatgtttcctactgctcacaatcatctgtgatatattgt 818

                                                                       
Query: 185 ttgattgactgctggtttatggagatggggactgagacttttggagcacatggaatctgg 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 817 ttgattgactgctggtttatggagatggggactgagactttcggagcacttggaatctgg 758

                                                                       
Query: 245 ggtaaagtgttgcatgggatcctagtcccattcagatgtctagctaggctcatttctctt 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggtaaagtgttgcatggaatcctagtcccattcagatgtctagctaggctcatttctctt 698

                                                                       
Query: 305 attctctgattccaatgacttaaaatagcatttaaaaagttagtcattgcaaatgaggag 364
           ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 697 attctctgattccgatgacttaaaatagcatttaagaagctagtcattgcaaatgaggag 638

                                                                       
Query: 365 tagaaagggcttgataccttaaaaaaatattgcaccaagcaggccatatgtaaatattca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tagaaagggcttgataccttaaaaaaatattgcaccaagcaggccatatgtaaatattca 578

                                                                       
Query: 425 gaagaatgtggcacaaataaccctttccaaacacagtaagttgctaacattaattgcctt 484
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gaagaatggggcacaaataaccctttccaaacacagtaagttgctaacattaattgcctt 518

                                                                       
Query: 485 aaacaatcaactttccctaaataagacaactctacttttagtcaggctttcgacctttaa 544
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 517 aaacaatcaactttccctaaataagagaactctacttttagtcaggctttcgacctttaa 458

                                                                       
Query: 545 ttccataatggaactgatatgccactgagaaatgatcatttggagtccacgaactagaat 604
           |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 457 ttccataatggaactgatatgccactgagaaatgatcatttggaatccatgaactagaat 398

                                                                       
Query: 605 tgtttttacattaagaataaagagtttacctaaaggtgctacggagaactctgtatctgt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgtttttacattaagaataaagagtttacctaaaggtgctacggagaactctgtatctgt 338

                               
Query: 665 caggtacacaggcatctctg 684
           ||||||||||||||||||||
Sbjct: 337 caggtacacaggcatctctg 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_j01.g1 MSMg01no521_j01.g1 CHROMAT_FILE:
MSMg01no521_j01.g1 PHD_FILE: MSMg01no521_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:56 2005
         (657 letters)



>mm_chr7_77056807_77057863
          Length = 1057

 Score = 1255 bits (649), Expect = 0.0
 Identities = 655/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccaaatactgaagactgcagattgataagggctatagagggcccaccatacattatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccaaatactgaagactgcagattgataagggctatagagggcccaccatacattatca 260

                                                                       
Query: 61  caggtaaagaggagtcagagacttctagagaccagcacagtctgggtgaaagagcacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtaaagaggagtcagagacttctagagaccagcacagtctgggtgaaagagcacaag 320

                                                                       
Query: 121 caaggtgtcaagggcccgctttggggtgtcaatactcacaggagctgggactatctctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggtgtcaagggcccgctttggggtgtcaatactcacaggagctgggactatctctga 380

                                                                       
Query: 181 aatctgcctccttgatatccttaattgaagggcagagagctgagacttgattccaaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctgcctccttgatatccttaattgaagggcagagagctgagacttgattccaaaatg 440

                                                                       
Query: 241 atggggacctttcagttaatggtcagtgaagagtctttgagacctcagaataagggtctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggggacctttcagttaatggtcagtgaagagtctttgagacctcagaataagggtctg 500

                                                                       
Query: 301 aaaagacgaggtgaagctggagtatcaccaagatggtgcgtctttacagtcacaaacagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagacgaggtgaagctggagtatcaccaagatggtgcgtctttacagtcacaaacagg 560

                                                                       
Query: 361 atgtagggaagggagaatggccatatctgagtcaggagaggcttagggcctgccctcccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtagggaagggagaatggccatatctgagtcaggagaggcttagggcctgccctcccc 620

                                                                       
Query: 421 cttgctgacttaacctttcattactgagaaagaaacccaaacacaggataatttgatgaa 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgctgacttaaccttccattactgagaaagaaacccaaacacaggataatttgatgaa 680

                                                                       
Query: 481 ccacacatacccataggcctcagactttgaatagagaaacaatggaccaggagaagaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccacacatacccataggcctcagactttgaatagagaaacaatggaccaggagaagaaag 740

                                                                       
Query: 541 cagaagcctctcaaggattgtatctgaagagggaaacaaagaagccagcaagacccgaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagaagcctctcaaggattgtatctgaagagggaaacaaagaagccagcaagacccgaga 800

                                                                    
Query: 601 aaggaactggcgagacacaccaataggcacaaaagggaaggcaggagaggacagaga 657
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaggaactggcaagacacaccaataggcacaaaagggaaggcaggagaggacagaga 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |