BAC Information

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BAC

Clone NameMSMg01-521M16
Chromosome7 (Build37)
Map Location 37,781,743 - 37,976,452
singlet/doubletdoublet
Overlap geneLOC100043874
Upstream geneLOC100043872, EG668988, LOC668507, Tshz3
Downstream geneZfp536, LOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521M16.T7 (MSMg01no521_m16.b1)MSMg01-521M16.TJ (MSMg01no521_m16.g1)
ACCAG592504AG592505
length766773
length of high quality
(start - end)		575 (68 - 642)568 (77 - 644)
definitionCHROMAT_FILE: MSMg01no521_m16.b1 PHD_FILE: MSMg01no521_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:14 2005CHROMAT_FILE: MSMg01no521_m16.g1 PHD_FILE: MSMg01no521_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,781,743 - 37,782,317)(37,975,885 - 37,976,452)
sequence
TCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCCTAAGGTGAGCGGGGACTGTAAGGTTAAACTTCATGATCCACGTG
GCTTGCTTCTCCTTCTCTTACAAGTGACCCAGAGTTCATTGGACTGAAGG
CCTCTGACCTGGATGTCATCCCCTAACTGCCCACAGAACTTTGCGGGCAT
TGCTTTAATTTCAAATGTTATTGACTTTACTTCTGTGACTGCCCAGTAGG
CATGAGCACATGAATGGTGATGGTCTGGGCTTGTTCTCTTAAAGGCCCAT
CTCACTTCAGTCTATACCGTTTTCTAGAATCCAGTTTCCCAAGGAGGCTG
ACATGGCATATCTATCCAGATGAGGCCATCTTTCTTTCTTCTTATCTAGT
AAGAACACTTCAAGCTGAATAGTTAGCGCTATAAAATTTAGTCTGTTTTA
AAATCTGATTTCTTCCATTTTTATTCCTCTTCACGTCTAAAATTCTCAAT
AGCCAGAAGACAGGTTCTGCACATATTTCTAAAGCAGAATGAAGACATCA
TAAGAATTTAAGACAGTATATACACACAGCAGTGCTTCAGCATGGATACA
CACACACACAGACACACACACACACACACACACACAGCAGTGCTTCTACA
TGGATACACACACACACACACCGCAGTGCTTCAGCATGGACACACTCACC
CACTCATCTTCTGACACACCCACTTCAATGCCTCCCCCAGGCACACCTCA
CCCCCCGAGCAGTGTN

NACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACTTAACCAATGGACTAGTTGTT
TGATGGGTTTATACTATAATGGTATTATTAAGCAGGATTAATTTTAAGGT
GTGGGGTCTTAGAGAAAGTGACTAAGGGGGTATCTTAAAGAGATTGTGTC
TTACCCTGGCCCTTCTTGTATTCCTTTCTGTCTGTTTCTTGTCTACCAAG
CAGTGAAGAGCAGTCTCTGACATGGTTCTGTCAATGTGATGTTCCCATGA
TTTCCATAGGAACAAGCAACCACAAGGCTGAGCCCTCTGAAACCATGAGG
CAAGATCAAGCAAGCCTTCTTCCTTATATTGTGTGTATCAGTGCATCTAG
CTATGGCATCAGCCAGCTAAAAAGTGGTTCATGCCATGTCTGTCACATGT
TGTCTTTCCTCATCACCCAGAGTCAGTTCATCAGGGAGAACCTCACATCA
TTTTCAGTTGCCCTGAGTTTCATTGTGTGTTGGGATATATCCAGTTTGGG
GACTTCATAGTTCTCTTTATTGAAGGTGAATTTTTAATGACAGAATGTTC
AGGGCCTTTCCATATGATTCCTGCAGACTCCATGGCCAGTGAGCTACAGG
GTCCACAATGCTGTGAAAGTCCTGTTAGATGCTGTATGGCTTCAGAGTGG
GGCTTCATAAAACCATTCTTTCACACTTGTTCTGGATACCTCTAATCTGG
GCGTTTTAGAGCCCGTGTGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_m16.b1 MSMg01no521_m16.b1 CHROMAT_FILE:
MSMg01no521_m16.b1 PHD_FILE: MSMg01no521_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:14 2005
         (575 letters)



>mm_chr7_37781543_37782517
          Length = 975

 Score = 1112 bits (575), Expect = 0.0
 Identities = 575/575 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggactgtaaggttaaacttcatgatccacgtggcttgcttctccttctcttacaagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggactgtaaggttaaacttcatgatccacgtggcttgcttctccttctcttacaagtga 260

                                                                       
Query: 61  cccagagttcattggactgaaggcctctgacctggatgtcatcccctaactgcccacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagagttcattggactgaaggcctctgacctggatgtcatcccctaactgcccacaga 320

                                                                       
Query: 121 actttgcgggcattgctttaatttcaaatgttattgactttacttctgtgactgcccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttgcgggcattgctttaatttcaaatgttattgactttacttctgtgactgcccagt 380

                                                                       
Query: 181 aggcatgagcacatgaatggtgatggtctgggcttgttctcttaaaggcccatctcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcatgagcacatgaatggtgatggtctgggcttgttctcttaaaggcccatctcactt 440

                                                                       
Query: 241 cagtctataccgttttctagaatccagtttcccaaggaggctgacatggcatatctatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtctataccgttttctagaatccagtttcccaaggaggctgacatggcatatctatcc 500

                                                                       
Query: 301 agatgaggccatctttctttcttcttatctagtaagaacacttcaagctgaatagttagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatgaggccatctttctttcttcttatctagtaagaacacttcaagctgaatagttagc 560

                                                                       
Query: 361 gctataaaatttagtctgttttaaaatctgatttcttccatttttattcctcttcacgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctataaaatttagtctgttttaaaatctgatttcttccatttttattcctcttcacgtc 620

                                                                       
Query: 421 taaaattctcaatagccagaagacaggttctgcacatatttctaaagcagaatgaagaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaattctcaatagccagaagacaggttctgcacatatttctaaagcagaatgaagaca 680

                                                                       
Query: 481 tcataagaatttaagacagtatatacacacagcagtgcttcagcatggatacacacacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcataagaatttaagacagtatatacacacagcagtgcttcagcatggatacacacacac 740

                                              
Query: 541 acagacacacacacacacacacacacacagcagtg 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 741 acagacacacacacacacacacacacacagcagtg 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_m16.g1 MSMg01no521_m16.g1 CHROMAT_FILE:
MSMg01no521_m16.g1 PHD_FILE: MSMg01no521_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:14 2005
         (568 letters)



>mm_chr7_37975685_37976652
          Length = 968

 Score = 1098 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacttaaccaatggactagttgtttgatgggtttatactataatggtattattaagcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tacttaaccaatggactagttgtttgatgggtttatactataatggtattattaagcagg 709

                                                                       
Query: 61  attaattttaaggtgtggggtcttagagaaagtgactaagggggtatcttaaagagattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 attaattttaaggtgtggggtcttagagaaagtgactaagggggtatcttaaagagattg 649

                                                                       
Query: 121 tgtcttaccctggcccttcttgtattcctttctgtctgtttcttgtctaccaagcagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tgtcttaccctggcccttcttgtattcctttctgtctgtttcttgtctaccaagcagtga 589

                                                                       
Query: 181 agagcagtctctgacatggttctgtcaatgtgatgttcccatgatttccataggaacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agagcagtctctgacatggttctgtcaatgtgatgttcccatgatttccataggaacaag 529

                                                                       
Query: 241 caaccacaaggctgagccctctgaaaccatgaggcaagatcaagcaagccttcttcctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caaccacaaggctgagccctctgaaaccatgaggcaagatcaagcaagccttcttcctta 469

                                                                       
Query: 301 tattgtgtgtatcagtgcatctagctatggcatcagccagctaaaaagtggttcatgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tattgtgtgtatcagtgcatctagctatggcatcagccagctaaaaagtggttcatgcca 409

                                                                       
Query: 361 tgtctgtcacatgttgtctttcctcatcacccagagtcagttcatcagggagaacctcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgtctgtcacatgttgtctttcctcatcacccagagtcagttcatcagggagaacctcac 349

                                                                       
Query: 421 atcattttcagttgccctgagtttcattgtgtgttgggatatatccagtttggggacttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atcattttcagttgccctgagtttcattgtgtgttgggatatatccagtttggggacttc 289

                                                                       
Query: 481 atagttctctttattgaaggtgaatttttaatgacagaatgttcagggcctttccatatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atagttctctttattgaaggtgaatttttaatgacagaatgttcagggcctttccatatg 229

                                       
Query: 541 attcctgcagactccatggccagtgagc 568
           ||||||||||||||||||||||||||||
Sbjct: 228 attcctgcagactccatggccagtgagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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