Query= MSMg01no522_i13.b1 MSMg01no522_i13.b1 CHROMAT_FILE:
MSMg01no522_i13.b1 PHD_FILE: MSMg01no522_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:09 2005
(594 letters)
>mm_chr7_133440349_133441342
Length = 994
Score = 1065 bits (551), Expect = 0.0
Identities = 580/595 (97%), Gaps = 11/595 (1%)
Strand = Plus / Minus
Query: 1 agcattctgcacag-aagggaacttccttctaaaattcaatgtgaactgtaactttaaaa 59
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 876 agcattctgcacagaaagggaacttccttctaaaattcaatgtgaactgtaacttt---a 820
Query: 60 aaaaaatcatatttatttatttatttatttatggggcggggcacatgtgggccacacagg 119
|||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 819 aaaaaatcatatttatttatttat-------cggggtggggcacatgtgggccacacagg 767
Query: 120 actcagttctctcctaccttgcaggttccagggtcctaaggcttgggagtaaggtactct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 actcagttctctcctaccttgcaggttccagggtcctaaggcttgggagtaaggtactct 707
Query: 180 tactatgtgaaccatctcactagcccagttagagctctttatactggattagtccagaat 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 706 tactatgtgaaccatctcactagcccaattagagctctttatactggattagtccagaat 647
Query: 240 gaagaatctgggcaggaaaggacactaagaccccagactgaacatctcaaaggctgtagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gaagaatctgggcaggaaaggacactaagaccccagactgaacatctcaaaggctgtagg 587
Query: 300 gacagcctggtcctcctgcagcatgtgaggctgggttccttatggttaaaccattggcat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gacagcctggtcctcctgcagcatgtgaggctgggttccttatggttaaaccattggcat 527
Query: 360 ggcagacagtggttttatctcgaggctacaggtgagtgctagattccacagcagtaggag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggcagacagtggttttatctcgaggctacaggtgagtgctagattccacagcagtaggag 467
Query: 420 attcacagcccttggtggtaaatattgaggttgctcccctctgataacctgggaagttct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attcacagcccttggtggtaaatattgaggttgctcccctctgataacctgggaagttct 407
Query: 480 gaacaccaagctgtgtccactttccctccaccttccagtcatttcagagaagtgacaggc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaacaccaagctgtgtccactttccctccaccttccagtcatttcagagaagtgacaggc 347
Query: 540 actctggagtgactgtatttcatcttggataagtgttctcactctgatttgctga 594
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 346 actctggagtgactgtatttcatcttggataagagttctcactctgatttgctga 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_i13.g1 MSMg01no522_i13.g1 CHROMAT_FILE:
MSMg01no522_i13.g1 PHD_FILE: MSMg01no522_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:09 2005
(484 letters)
>mm_chr7_133306955_133307840
Length = 886
Score = 859 bits (444), Expect = 0.0
Identities = 477/491 (97%), Gaps = 10/491 (2%)
Strand = Plus / Plus
Query: 1 aagggcaattccaatatactcagaagcagcccaagaaagccagtagttgactataatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aagggcaattccaatatactcagaagcagcccaagaaagccagtagttgactataatctc 258
Query: 61 agcaatctgcaggtgggaattcacaagtctacccaagaaccaatcaggaaaaaaaa--gg 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 259 agcaatctgcaggtgggaattcacaagtctacccaagaaccaatcaggaaaaaaaaaagg 318
Query: 119 ggaaagagaaaggaaaaaagaaggacagaggaaggagaggagggagggagggagctgctc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggaaagagaaaggaaaaaagaaggacagaggaaggagaggagggagggagggagctgctc 378
Query: 179 tctataaaaac---ctctcttgaaagttaaaacttctaaaaacaccctccacattttctc 235
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctataaaaacaacctctcttgaaagttaaaacttctaaaaacaccctccacattttctc 438
Query: 236 cattctatacaaaattttattatttctaacacattcaaataatgtctgccttggtaataa 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 439 cattctatacaaaattttattatttctaacacattcaaataatgtctgccttggta-taa 497
Query: 296 cttttggctaaaataaagtaggagagacaccctctttaaggctctctgtgtggattattt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttttggctaaaataaagtaggagagacaccctctttaaggctctctgtgtggattattt 557
Query: 356 ctgggatgtcaaccctaccctgagattttttttttccttccttgtacctttttcttttct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctgggatgtcaaccctaccctgagattttttttttccttccttgtacctttttcttttct 617
Query: 416 ttctctattttcaactgagcactanaatagcgtgcgtgcgtgtgtgtgtgtgtg--agtg 473
|||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||| ||||
Sbjct: 618 ttctctattttcaactgagcactagaatagcgtgcgtgcgtgcgtgcgtgcgtgcgagtg 677
Query: 474 -gg-ggggggg 482
|| |||||||
Sbjct: 678 aggtggggggg 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 886
Length adjustment: 10
Effective length of query: 474
Effective length of database: 876
Effective search space: 415224
Effective search space used: 415224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
