BAC Information

Click to search

BAC

Clone NameMSMg01-524B23
Chromosome7 (Build37)
Map Location 142,838,538 - 142,839,123
singlet/doubletsinglet
Overlap genePtpre
Upstream geneLOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254, Foxi2, Clrn3
Downstream geneMki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524B23.T7 (MSMg01no524_b23.b1)MSMg01-524B23.TJ (MSMg01no524_b23.g1)
ACCAG594275AG594276
length771766
length of high quality
(start - end)
638 (42 - 679)551 (69 - 619)
definitionCHROMAT_FILE: MSMg01no524_b23.b1 PHD_FILE: MSMg01no524_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:17 2005CHROMAT_FILE: MSMg01no524_b23.g1 PHD_FILE: MSMg01no524_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
GAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTGGGTGGCCTTTTTG
TCTTATTTACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGG
TCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATT
CAGGAATTTTTCCCCTGTACCCATATCTCCAAGGGTTTTCCCTACTTTCT
CCTCTATAAGTTTCAGCGTCTCTGGATTTATGTGGAGTTCCTTAATCCAC
TTAGATTTGACCTTGGTACAAGGAGATAGGAATGGATCAATTCGCATTCT
TCTACATGATAACCGCCAGTTCTGTCAGCACCATTTGTTTAAAATGCTGT
CTTTTTTTCCCACCGGATGGTTTTTGCTCCCTTGTCAAAGATCAAGTGAC
CATAGGTGTGTGGGTTCCTTTCTGGGTCTTGAATTCTATGCCATTGTTCT
ACTTGTCTGTCGCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCT
GTAGTACAGCTTTAGGTCAGGCATGGTAATTCGACCAGAGGTTTTTTTAT
CCTTGAGCAAAGTTTTTGCTATTCTNAGGTTTTTGTTATTCCACATGAAT
TTGCAGAATGCCCTTTCTAAN
ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTCTTAAAAAATGTGTCACGATGAATATT
GAATTCATTTTGGCCAGAGATGAAAGGAAACCATTTCCTGTTGTTCTGGC
ACATTCTGGCAATGTGCTAACCCCTCAAGAGATACTTCATGATTTTTTTC
AGGGGCCAGATCTTTTCAAGAGCACTTGGGACCCCCTCCCAAGTTGCAGG
ACAAAGGAGCAGCCATGTAATTGGAGGCCTCTGTAGCTCCTGATAGTGGG
ACCAGAGCAGTTGCTAGTGGGCTGAGCCCCAGAGGAGACCTATCCAGAGC
AAGTTTCTGTTCTGGGGGCTGAAGTCATGTGATAGTCTTCTCTTCTTGAA
AGCAACACTTCCTGCCCACGGCTATGTGATGAACCGATACATTTTGCTCT
CAAATGAACCTGGAAAGCCCTGGACTTGGATGGCGATGCCACCCTGAGGG
ACCACCTGTGGGGCTGTCACAGGACTCTGACAGATCAAACCTCTCCTGTG
GGGAGATGGATGCTCGACAGCTTTCTCGGTATCCCTAAGTGGCCAGCTGA
TTAGTATTTGGTGAGGGAAGTCAGGGATGTGGGTTGAGAAACTTTAGTGA
ATGTTCTTGAAGGTCACTGTCCTTGGGGCAAGTCTAAGTACAATGTTCNG
TGCCGCANGACATGATAGCTTATTTGCATGTGGAAAGACATGTGCAAAAG
AGCCTGCATGCACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_b23.g1 MSMg01no524_b23.g1 CHROMAT_FILE:
MSMg01no524_b23.g1 PHD_FILE: MSMg01no524_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:17 2005
         (551 letters)



>mm_chr7_142838430_142839377
          Length = 948

 Score =  891 bits (461), Expect = 0.0
 Identities = 538/589 (91%), Gaps = 41/589 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtcttaaaaaatgtgtcacgatgaatattgaattcattttggccagagatgaaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tttgtcttaaaaaatgtgtcacgatgaatattgaattcattttggccagagatgaaagga 635

                                                                       
Query: 61  aaccatttcctgttgttctggcacattctggcaatgtgctaacccctcaagagatacttc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 634 aaccatttcctgttgttctgtcacattctggcaatgtgctaacccctcaggagatacttc 575

                                                                       
Query: 121 atgatttttttcaggggccagatcttttcaagagcacttgggaccccctcccaagttgca 180
           ||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 574 atga--tttttcaggggccagatcttttcaagagcacttgggacccccttccaagttgca 517

                                                                       
Query: 181 ggacaaaggagcagccatgtaattggaggcctctgtagctcctgatagtgggaccagagc 240
           |||||||||||||||| ||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 516 ggacaaaggagcagccgtgtaactggaggcctccgtagctcctgatagcgggaccagagc 457

                                                                       
Query: 241 agttgctagtgggctgagccccagaggagacctatccagagcaagtttctgttctggggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agttgctagtgggctgagccccagaggagacctatccagagcaagtttctgttctggggg 397

                                                                       
Query: 301 ctgaagtcatgtgatagtcttctcttcttgaaagcaacacttcctgcccacggctatgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgaagtcatgtgatagtcttctcttcttgaaagcaacacttcctgcccacggctatgtg 337

                                                                       
Query: 361 atgaaccgatacattttgctctcaaatgaacctggaaagccctggacttggatggcgatg 420
           ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||
Sbjct: 336 atgaaccgatacattttgctctcaaatgaacctggaaagtccta-acttggatggcgatg 278

                                                                       
Query: 421 ccaccctgagggaccacctgtggggctgtcacaggactctgacagatcaaacctctcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ccaccctgagggaccacctgtggggctgtcacaggactctgacagatcaaacctctcctg 218

                                                                       
Query: 481 tggggagatggatgctc--------------------------------------gacag 502
           |||||||||||||||||                                      |||||
Sbjct: 217 tggggagatggatgctccgttcccggtggcttcaaggtgtttactagcatgtgcagacag 158

                                                            
Query: 503 ctttctcggtatccctaagtggccagctgattagtatttggtgagggaa 551
           ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ctttcgcggtatccctaagtggccagctgattagtatttggtgagggaa 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 948
Length adjustment: 10
Effective length of query: 541
Effective length of database: 938
Effective search space:   507458
Effective search space used:   507458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)