BAC Information

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BAC

Clone NameMSMg01-524H08
Chromosome7 (Build37)
Map Location 135,154,966 - 135,155,435
singlet/doubletsinglet
Overlap genenone
Upstream geneMvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72
Downstream geneLOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524H08.T7 (MSMg01no524_h08.b1)MSMg01-524H08.TJ (MSMg01no524_h08.g1)
ACCAG594531AG594532
length773773
length of high quality
(start - end)		619 (36 - 654)587 (65 - 651)
definitionCHROMAT_FILE: MSMg01no524_h08.b1 PHD_FILE: MSMg01no524_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:44 2005CHROMAT_FILE: MSMg01no524_h08.g1 PHD_FILE: MSMg01no524_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTAT
GTGCCCCAAGTTAGCTTCAAATTCCCGATTCCCCTCTTGCGCCTCTGGAG
TGTTGTGGTTACAGGTGTATGCCGCCATGCTCAGCAAAGTCGGTTGGTTG
TGACAAGTTTCTAAGTGACCCAGAAGCTGCCGGTCACCTTGGCATCACAC
TGAGTACACCCTGACTGTAGACTATCAGCGTAGACAAGAGGCATTAAGTC
TGATTATGTTGCCTGGCTCAACTAACACTTAAAATCTGCCTGACAGAGAG
AGGAGAGGGAATAGTAGAACTCTTAGTCTCTCCCATGGCTTCTAGAATGT
ACACCCTGACTGTAGACTATCAGCATAGACAAGAGGCATTAAGTCTGATT
ATGTTGCCTGGCTCAACTAACACTTAAAATCTGCCTGACAAAGAGAGGAG
AGGGAATAGTAGAACTCTTAGTCTCTCCCATGGCTTCTAGAATGTGGTTT
TGTTTGGACATTGAAGAAATCCTCCATGATTTCTTCCAAGAAATCCTCCA
TGGAATCCTCCAAGAGAAAGAGCTTCACACTGTCTTTCTTTGGGCCCTGC
TGCTGCCAGCAAATAAGATTTTCTGTGGGGCTTCTAAACTGGCCTCTTCC
TGTCTTCCTTGGAACTTTGCTCTGTAACCCAGGCTGGTCTTGAACTCAGA
AATCTGCCTGTCTCTGTGTCCAGAGTGCTGGAATTAAAGGAGTGTGCCAC
ACAACTGGGCTACTTTTTTAGAC

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCCGAGGAATACCGAATGGCTGAGAAGCACTTG
AAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAAC
CCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTTTGGTG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTC
TCCTGGGCATATAGCCAGAAGATGTCCCAACCGGTAAGAAGGACAAATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAAATGTGGTACATT
TACACAATGAAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACAC
AATCACAAAAGAACTCACATAATATGTACTCACTGATAAGTGGATATTAG
CCCAGAAACTTAGTATAGTGAGATATAAGGTACAATTTGCAAAACACATG
AAACTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAG
AATTGGAAACATCACCCATGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_h08.b1 MSMg01no524_h08.b1 CHROMAT_FILE:
MSMg01no524_h08.b1 PHD_FILE: MSMg01no524_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:44 2005
         (619 letters)



>mm_chr7_135154762_135155780
          Length = 1019

 Score =  567 bits (293), Expect = e-165
 Identities = 463/615 (75%), Gaps = 145/615 (23%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactatgtgccccaagttagcttcaaattcccgattcccctcttgcgcctctgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcactatgtgccccaagttagcttcaaattcccgattcccctcttccgcctctgga 264

                                                                       
Query: 65  gtgttgtggttacaggtgtatgccgccatgctcagcaaagtcggttggttgtgacaagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgttgtggttacaggtgtatgccgccatgctcagcaaagtcggttggttgtgacaagtt 324

                                                                       
Query: 125 tctaagtgacccagaagctgccggtcaccttggcatcacactgagtacaccctgactgta 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tctaagtgacccagaagctgccggtcaccttggcatcacactaagtacaccctgactgta 384

                                                                       
Query: 185 gactatcagcgtagacaagaggcattaagtctgattatgttgcctggctcaactaacact 244
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 gactatcagtgtagacaagaggcattaagtctgattatattgcctggctcaactaacact 444

                                                                       
Query: 245 taaaatctgcctgacagagagaggagagggaatagtagaactcttagtctctcccatggc 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaaatctgcctgaccgagagaggagagggaatagtagaactcttagtctctcccatggc 504

                                                                       
Query: 305 ttctagaatgtacaccctgactgtagactatcagcatagacaagaggcattaagtctgat 364
                                                                       
Sbjct: 504 ------------------------------------------------------------ 504

                                                                       
Query: 365 tatgttgcctggctcaactaacacttaaaatctgcctgacaaagagaggagagggaatag 424
                                                                       
Sbjct: 504 ------------------------------------------------------------ 504

                                                                       
Query: 425 tagaactcttagtctctcccatggcttctagaatgtggttttgtttggacattgaagaaa 484
                ||||                    |||||||||||||||||||||||||||||||
Sbjct: 505 -----ctct--------------------agaatgtggttttgtttggacattgaagaaa 539

                                                                       
Query: 485 tcctccatgatttcttccaagaaatcctccatggaatcctccaagagaaagagcttcaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 540 tcctccatgatttcttccaagaaatcctccatggaatcctccaagagaaagagtttcaca 599

                                                                       
Query: 545 ctgtctttctttgggccctgctgctgccagcaaataagattttctgtggggcttctaaac 604
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 600 ctgtctttctttgggccctgctgctgccagcaaataagactttctgtggggcttctaaac 659

                          
Query: 605 tggcctcttcctgtc 619
           |||||||||||||||
Sbjct: 660 tggcctcttcctgtc 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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