BAC Information

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BAC

Clone NameMSMg01-525I24
Chromosome7 (Build37)
Map Location 122,423,976 - 122,424,508
singlet/doubletsinglet
Overlap genenone
Upstream gene4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525I24.T7 (MSMg01no525_i24.b1)MSMg01-525I24.TJ (MSMg01no525_i24.g1)
ACCAG595368AG595369
length774775
length of high quality
(start - end)
537 (37 - 573)530 (67 - 596)
definitionCHROMAT_FILE: MSMg01no525_i24.b1 PHD_FILE: MSMg01no525_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:13 2005CHROMAT_FILE: MSMg01no525_i24.g1 PHD_FILE: MSMg01no525_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGACTACTATATTTCATAGGATCCGCGGAATTCCCAC
TGAATTTCGTCTTGAGAAACTGAGGTGATAAGTGAAGAACTAAGATAAGG
AGCAGACAGTGTTAGTGACTGAGTGGGTTATTGCAGCAGGCCTCAGATAG
CCAACACAGCTAGCTCTTACTGTCATAATAGCTCATAGATGGGCACTTAA
ATTACATTGGTTCTTTCTGTAACCAAGATTGTTTTCTAACTGAGCAGGAA
ATTCTCTGGACATGTACCAAGGATCATTATAGAACCAATGGTTATTGGGC
TATATTTTATAACCGTGAGGTCAACCTTAGGATGAAGCTGAGCTCTGAAG
AGACAAGAAGATAGACATAAACTGGGTCTCAGTCATATTCTGAGCTCAAT
TCAGCTTTCTCCTTTCCCAGGAGACATCACACACTCTAGCTCTTAAGCTA
CTTTGAGTTGACTTATCTGATACTTTCTACATAAGAATATATTCCAATAC
ATTATTATCACTTGGGGAATTTATAGAAAAAATTGACACATATTAATAGA
ATATAAGTGGTATCTATAATCACATAGAAGGAAATGGCATCCATTGAAAT
TAAATCGTCTGCAACCCCTTCAAATTTGTATTTTTTATACATGCCAAAAA
ACTGGGAGAGGGTATATAAACCATTACGGGGAAATAGATGGTTCAAGTTC
CCAATGGCTATCTACCTCAGCTAGCTCACTTGCATAGACAAAAATCATCA
TCATATTCCTATGTCAATGAGAAA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGATCCTCCTTCCCCCTAGCTCCCAAGTGCTGA
GATTCTGGGGACATACTGCCACAGGCCAGCAGTGCCACTTTGGACCTCAT
GGATGACTTGAACTGTAGGGTCATTTTAGGAAGAAGCATTACATACAAAA
GCTTGCTTAGGAATCTTCAAACAAGCCTTTCCACTGCTAACAGCATCAGA
TGGGTATTTCTGCTCTGAGATCTACCCACATCCATAAAACAGCCCGGATT
AAGCCCAAGAAAGAAAAGCGCAGCCCAGCAGCTCATGGAAAGCTGGATCC
CAATAGTCAGCCCCAGTCATACCCAGTGGGGCTACATGAGCACAGGCGGA
TTCTTCAGCAGGTATTCATATTTCTAATGTCTCCCATACGAACCTCTCTG
TCCCAGGTGAAACCAGTTGGGCCCGTGGACTATGAATGTCCTAAAACATT
GATCTGGATAATGTTTCTTTCTTTTTTTATGGTTTTAGAGCTTTATTATA
AAAAGACAGGGGGGAAAGAGAGAAGGTAGAAAGAGGGAGAGAGGCCAGAC
ATGGCCATGTGGAGAGAGGGGGAAAGAGAGAGAGGGAAGGAAGGCTATAG
AGTTAGATAGGTGAGAGCGCAAAAGCGTGGTCCTTTCCTTAATTTTTTTT
TTTTATTGTCTGGGTGGGGACCTTGGAGTACTACTTAGGTTCACTGTTTC
TGGAATAGCCTGTGTGTATTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_i24.b1 MSMg01no525_i24.b1 CHROMAT_FILE:
MSMg01no525_i24.b1 PHD_FILE: MSMg01no525_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:13 2005
         (537 letters)



>mm_chr7_122423772_122424708
          Length = 937

 Score =  984 bits (509), Expect = 0.0
 Identities = 527/533 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccactgaatttcgtcttgagaaactgaggtgataagtgaagaactaagataagg 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccactgaaccacgtcttgagaaactgaggtgataagtgaagaactaagataagg 264

                                                                       
Query: 65  agcagacagtgttagtgactgagtgggttattgcagcaggcctcagatagccaacacagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcagacagtgttagtgactgagtgggttattgcagcaggcctcagatagccaacacagc 324

                                                                       
Query: 125 tagctcttactgtcataatagctcatagatgggcacttaaattacattggttctttctgt 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagctattactgtcataatagctcatagatgggcacttaaattacattggttctttctgt 384

                                                                       
Query: 185 aaccaagattgttttctaactgagcaggaaattctctggacatgtaccaaggatcattat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaccaagattgttttctaactgagcaggaaattctctggacatgtaccaaggatcattat 444

                                                                       
Query: 245 agaaccaatggttattgggctatattttataaccgtgaggtcaaccttaggatgaagctg 304
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaccaatggttattgggctacatcttataaccgtgaggtcaaccttaggatgaagctg 504

                                                                       
Query: 305 agctctgaagagacaagaagatagacataaactgggtctcagtcatattctgagctcaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctctgaagagacaagaagatagacataaactgggtctcagtcatattctgagctcaat 564

                                                                       
Query: 365 tcagctttctcctttcccaggagacatcacacactctagctcttaagctactttgagttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcagctttctcctttcccaggagacatcacacactctagctcttaagctactttgagttg 624

                                                                       
Query: 425 acttatctgatactttctacataagaatatattccaatacattattatcacttggggaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acttatctgatactttctacataagaatatattccaatacattattatcacttggggaat 684

                                                                
Query: 485 ttatagaaaaaattgacacatattaatagaatataagtggtatctataatcac 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttatagaaaaaattgacacatattaatagaatataagtggtatctataatcac 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)