BAC Information

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BAC

Clone NameMSMg01-525P08
Chromosome7 (Build37)
Map Location 147,533,026 - 147,533,620
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60
Downstream geneGA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525P08.T7 (MSMg01no525_p08.b1)MSMg01-525P08.TJ (MSMg01no525_p08.g1)
ACCAG595669AG595670
length768735
length of high quality
(start - end)		---595 (70 - 664)
definitionCHROMAT_FILE: MSMg01no525_p08.b1 PHD_FILE: MSMg01no525_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:44 2005CHROMAT_FILE: MSMg01no525_p08.g1 PHD_FILE: MSMg01no525_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTATATATCTTGGATGGGGGAGAGGAGGTGGGGAGGAACTAGAAGGAGTG
GAGAGATGACTACTATAATCAAGATGTGTTATCCTGAGGAAATATTCCAT
TTTCATTATAATGAAAAATAAAATGCACCATCAATCATCAATCAATAGAA
AGAGCTGCGATTTGAATTTCCGATGAAGCAATACACATTCTAGAAAAACA
AATTTCTTCCAAATACTCCTCTAAATAGAATTATTACATGCCTGTGTAAA
GTGATGGCGTTAATTTTCTATCAAGAAGCAAATTAGATTGTCCAGTTTTT
GACTTGGTGTAGACTCTGAATTCATGCTACAATACCTTATTTTTCAAATA
TCATCATGGCTCATAAAAATCTTAATTACACATTTTTTACTTGACGGACT
CTTTTATTCACGTTTTATCCCTAGTGTATCTATCAATTCCTTGCTTGAAC
TTACTGCATTTTTCCCATATTTCTCCTTTCTCTCCATTTCTTTCTTTTAT
TCTTTCCAATTGTACTCTTTTGTGTCCCTCCACCCCTTCGTTTCCGCTCC
TCTCACGCCCTTTCTTTTGACCCCATTTTTATCTTGCCCCTTTTGTCCCT
TGCGAACCCTCGCTCCTTTCATAGTACCACCTCTTTTCCCTAATTAATAA
TATCATTTTTCCCCACGTATAACTCTCTATTGTTTATTATGGCTTGTTGC
TCATTACTCTACACTCTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTTTGTAATTCTGTTTTTGTAGAGCCACT
AGCTTTGCACACTTTGCTTTGTATGTAGAATGGGGAGAAACATGGTCTGA
TATAACACTGTCACATGGTTGCAGAGAGTAAAAATAGCATATGAGGATCT
CTAGCTTGAAATGGAGACAGCTATGTTTAAAACTCAACACTTACTACTAA
GTTGTGGAGAAAATAGGTTGTGAATGATGGAAAAGATGTGTGAGATAAAG
TATAATCAAAGAAAATGAAGTGATGGTGGCAACGTAGGGAAAAGTGGGGA
AATGATGAGCACTGCTCTATTGGACACAATCTCTCTTTTTTTAACCTTGG
GCACTGAAGGAGAGGTACAAAAGAATATTTCAGTATAAATAGCACTGCAC
AAGACTGCCACATGCAGGCTTATATGTAGTGGTAGAGTGTGTTCACATAT
GAACTTATGAAGAAACCTACAGAGAAAACAAGTGAGTGGTATCTGATGGG
TCTTTTATGTCAAGCTATAGAACTTGACAAGCTGAAGGACTGTGAGAGTC
GTGGTGGACATGGACTCAGGACAAAAGGGACAGATAAATCGAGGTTCACA
CTCTGCACTCCTTGGATGATGGAGGGAGAAACTGACAATTGTGGAAATGA
CAAGCAGCTACAAACTGGACAACAGCTTAAGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_p08.g1 MSMg01no525_p08.g1 CHROMAT_FILE:
MSMg01no525_p08.g1 PHD_FILE: MSMg01no525_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:45 2005
         (595 letters)



>mm_chr7_147532826_147533820
          Length = 995

 Score = 1104 bits (571), Expect = 0.0
 Identities = 589/595 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttgtaattctgtttttgtagagccactagctttgcacactttgctttgtatgtaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 795 acttttgtaattctgtttttgtagagccactagctttgcacactttgctttggatgtaga 736

                                                                       
Query: 61  atggggagaaacatggtctgatataacactgtcacatggttgcagagagtaaaaatagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 735 atggggagaaacatggtctgatataacactgtcacatggttgcagagagtaaagatagca 676

                                                                       
Query: 121 tatgaggatctctagcttgaaatggagacagctatgtttaaaactcaacacttactacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tatgaggatctctagcttgaaatggagacagctatgtttaaaactcaacacttactacta 616

                                                                       
Query: 181 agttgtggagaaaataggttgtgaatgatggaaaagatgtgtgagataaagtataatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agttgtggagaaaataggttgtgaatgatggaaaagatgtgtgagataaagtataatcaa 556

                                                                       
Query: 241 agaaaatgaagtgatggtggcaacgtagggaaaagtggggaaatgatgagcactgctcta 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agaaaatgaagtgatggtgccaacgtagggaaaagtggggaaatgatgagcactgctcta 496

                                                                       
Query: 301 ttggacacaatctctctttttttaaccttgggcactgaaggagaggtacaaaagaatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttggacacaatctctctttttttaaccttgggcactgaaggagaggtacaaaagaatatt 436

                                                                       
Query: 361 tcagtataaatagcactgcacaagactgccacatgcaggcttatatgtagtggtagagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcagtataaatagcactgcacaagactgccacatgcaggcttatatgtagtggtagagtg 376

                                                                       
Query: 421 tgttcacatatgaacttatgaagaaacctacagagaaaacaagtgagtggtatctgatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 375 tgttcacatatgaacttatgaagaaacctacagagaaaacaagtgagtggtttctgatgg 316

                                                                       
Query: 481 gtcttttatgtcaagctatagaacttgacaagctgaaggactgtgagagtcgtggtggac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 315 gtcttttatgtcaagctatagaacttgacaagctgaaggactgtgagagtcatggtagac 256

                                                                  
Query: 541 atggactcaggacaaaagggacagataaatcgaggttcacactctgcactccttg 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atggactcaggacaaaagggacagataaatcgaggttcacactctgcactccttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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