BAC Information

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BAC

Clone NameMSMg01-526F04
Chromosome7 (Build37)
Map Location 27,050,235 - 27,050,906
singlet/doubletsinglet
Overlap genenone
Upstream geneCic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968
Downstream geneCyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526F04.T7 (MSMg01no526_f04.b1)MSMg01-526F04.TJ (MSMg01no526_f04.g1)
ACCAG595945AG595946
length752744
length of high quality
(start - end)		669 (35 - 703)582 (66 - 647)
definitionCHROMAT_FILE: MSMg01no526_f04.b1 PHD_FILE: MSMg01no526_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:12 2005CHROMAT_FILE: MSMg01no526_f04.g1 PHD_FILE: MSMg01no526_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:12 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGCA
TTTAAAAAACTCCATGTAAAATGAATTCCAGCCTGCTGTATGGGAAATGT
TTCTCTTTAGCGAGTCCTCAAGTCTGTTAAATACAAACTCTGAATAAGTA
CTTTGTTGAGGCTCAGTGGTTTTCAAGTCTTTATTCCACAAGTCTTAGAC
ATGAACAAAAACTTATGTCATGGTAAGTTAATAGCTAGCTCTTATAAAAA
GTCACACCACATAGACACACATGAATGTATACACAATGTGGTCAGCACTG
TTAGAGAAATGGCAATATCTGGTGTGATGAAATCTCACTAACACAAAAGA
ATAAAAATAGGCAAAATATGCCAGTAGGAGTGGCAAGGATAATGATAATA
TCTGGTGAATAATAACTAATAACTACTGCTGAAATGTTCAGTGACTCCAC
TGAAACATTTTCTGCAATAATCATGCACAAGTCAGAAGCTGAGAATGAAT
ATGGTAAAAAAGAAGTCAATGTATCAGGTAGGCCATCAGTGCAGTGTAAC
AAAAGGAAACTCTCGGGTCACCATCTCTATTCCTGTGAGAGATGGTGTCT
GTAAACCCTTCTAATCCTGGGGGACATCTTGTAGAAGCAGAGAGGAGGAG
CTTTGAATCAGTACCAGGCTCAGCCATACATCCATAGGAAATGGCACTTT
TCCCTTCAAAGTAATCATCTATGTTGTGGCTCCCACCAAGAATATCAAGG
AC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCATGACTTATTAATACATACCATCCTTTCATACG
GCATGAATTTATATTGATGTTTGACTATATGTTCAAACTAACTTCTAAAG
TCTTCCACCTGCTCAAACAAAGAACAGTAAATCATCAATAATTTATCTGT
GTACTCTGCACATTCCATACAAATGTCTTTATATAACTATATATTGCTTG
TAAGGTTTGTATGTTGCAGAATGGAAGGCCAAGGAAGCAGCCCTGGCAAG
AACCACCCTCGAAGATTTCTGATATGCCTGATCCAGCCTCAGACTGCTGG
TTCCTTGGAAGAATTGCTTTCAAAACAGCTTAGGAAGGGTTGCTGATTCC
AGATGACCTCAGTTCACCCGGCCTTTCAAACTATTCCAGTCAGGGCTTCA
ATTAAGCCCTGAACTTTCTCAGCACATAGAGACTGAACAATAAATGATTA
CTGCTAGCTTTCTTAAGACTAACCATTTTCCTAAATTTTTTTGGCCACCA
AAGATGAATTCTATGTCCAAAATCAGCAGAAAGCAATTATAAGAGAACTC
TACCACATTCCCAAGAGGTGGGGGAAAGGAATTTTGGTTATTCAATAGAT
GTTAGATGTTTGTTGTCTTTTAAAGGGGATAGTTACAAATTATTATGGTC
TTGGACAGGCAGGAGATGAAATAGGGAGGTTAGATTTGGGGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_f04.b1 MSMg01no526_f04.b1 CHROMAT_FILE:
MSMg01no526_f04.b1 PHD_FILE: MSMg01no526_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:12 2005
         (669 letters)



>mm_chr7_27050031_27051106
          Length = 1076

 Score = 1118 bits (578), Expect = 0.0
 Identities = 647/672 (96%), Gaps = 7/672 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgcatttaaaaaactccatgtaaaatgaattccagcctgctgtatgggaaat 64
           ||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||| | |||
Sbjct: 876 gaattctttgcctttaaaaaactccatgtaaaatgaactccaggctgctatatgagtaat 817

                                                                       
Query: 65  gtttctctttagcgagtcctcaagtctgttaaatacaaactctgaataagtactttgttg 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gtttctctttagagagtcctcaagtctgttaaatacaaactctgaataagtactttgttg 757

                                                                       
Query: 125 aggctcagtggttttcaagtctttattccaca--agtcttagacatgaacaaaaacttat 182
           |||||||||||||||| |||||||||||||||  ||||||||||||| ||||||||||||
Sbjct: 756 aggctcagtggttttccagtctttattccacaagagtcttagacatggacaaaaacttat 697

                                                                       
Query: 183 gtcatggtaagttaatagctagctcttataaaaagtcacaccacatagacacacatgaat 242
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gtcatagtaagttaatagctagctcttataaaaagtcacaccacatagacacacatgaat 637

                                                                       
Query: 243 gtatacacaatgtggtcagcactgttagagaaatggcaatatctggtgtgatgaaatctc 302
           || ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 636 gtgtacacaatgtggtcagcgctgttagagaaatggcaatatctggagtgatgaaatctc 577

                                                                       
Query: 303 act-a-acacaaaagaataaaaataggcaaaatatgccagtaggagtggcaaggataatg 360
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 actcacacacaaaagaataaaaataggcaaaatatgccagtaggagtggcaaggataatg 517

                                                                       
Query: 361 ataatatctggtgaataataactaataactactgctgaaatgttcagtgactccactgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ataatatctggtgaataataactaataactactgctgaaatgttcagtgactccactgaa 457

                                                                       
Query: 421 acattttctgcaataatcatgcacaagtcagaagctgagaatgaatatggtaaaaaagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 456 acattttctgcaataatcatgcacaagtcagaagctgagaatgaatatggtaaaagagaa 397

                                                                       
Query: 481 gtcaatgtatcaggtaggccatcagtgcagtgtaacaaaaggaaactctcgggtcaccat 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtcaatgcatcaggtaggccatcagtgcagtgtaacaaaaggaaactctcgggtcaccat 337

                                                                       
Query: 541 ctctattcctgtgagagatggtgtctgtaaacccttctaatcctgggggacatctt---g 597
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |
Sbjct: 336 ttctattcctgtgagagatggtgtctgtaaacctttctaatcctgggggacatcttcttg 277

                                                                       
Query: 598 tagaagcagagaggaggagctttgaatcagtaccaggctcagccatacatccataggaaa 657
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tagaagcagagagtaggagctttgaatcagtaccaggctcagccatacatccataggaaa 217

                       
Query: 658 tggcacttttcc 669
           ||||||||||||
Sbjct: 216 tggcacttttcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1076
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1066
Effective search space:   702494
Effective search space used:   702494
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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