BAC Information

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BAC

Clone NameMSMg01-526G19
Chromosome7 (Build37)
Map Location 78,158,299 - 78,158,984
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526G19.T7 (MSMg01no526_g19.b1)MSMg01-526G19.TJ (MSMg01no526_g19.g1)
ACCAG596022AG596023
length736740
length of high quality
(start - end)
690 (37 - 726)674 (67 - 740)
definitionCHROMAT_FILE: MSMg01no526_g19.b1 PHD_FILE: MSMg01no526_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:20 2005CHROMAT_FILE: MSMg01no526_g19.g1 PHD_FILE: MSMg01no526_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCA
GCTTATGAACACCTATGGAGAAGCACTTTCCTTGTAATTATACCTATGAA
AGATGACTGTCCCTTTGGAGTCCCCTGTTATTGTTTCCAGGCAAACCATT
TATACTTTCCAATTATGTGCACCTCAGTGATATGAAGCTTGAGGAAGTGC
ATTTCGGTTAAGACACCCAAGCTTGTCTGTCTTTTCTGGGACTCACTGAA
ACAGTGGCAAGACCTTGAAACTTCTCTAGGTTGAGGATTTAGTGTAATAA
TCCTTTGAGAGTTCTCAATGGTGAAACTTGAGAAAATAAGTATTTGTGGG
ACAAAGAGCAGAAAGCCAGTGAGCCTCATCTTTCACCAAGCCACAAGTAG
GGAAGTTATACACACAGAGAATTTGGGAAGCAAAAAAGAGCAGGAGTTGG
CCTTGAACCATAGAAATATGAGAGCTTTGGATACAAGACAGGAACCAGGC
TTTAAATCCTAAACATGGTGTGAGATGTTGCTCACATGCAGAGCCCAGAT
CAGGTTTGTGAAAGGGGAGTGTGTGGGTGTCAGAAGAGAAGACAGTGTGC
TCACAGAGGAGTTAGGGATGCTGGGGGATGGAGAAAGAAGCAACATCTAA
GATGAAAACAAAAACATCGAGAGTTTCACAGCCTGACGGAAACTGTGCAT
ATAAAAAGGCACAGCAACTACAAAGAANAAATCCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCAAGTTCTCACCAAAGAATTCAATATGACT
CTTGAGATCTTTGACAAGGGATCAGAAAGCTTCTGCTAGGGTCCTGGGTC
TTTAAGGAGAAAACGTCATGCCCAAGATTAATCCTAACAGTATAGAAAGA
AGTTTTCGATCTGTGTTACTTTAGTGTCTGGTCTTTTTTATTTCCAAGAC
TTCTATAATCATATCAATTTAAAAATATTAAACTATATTTCCCATGTATT
GTGAGCATTTCCTCTTAAACACTCATGGTAGGTCTTTCCACATAGAAATG
TTGAAAGGCTAAAGAAGGCTAACAGACAAACGCTGCTCAAGAGAAAAAAC
CAGAGCAGTTCTAGACATTTCAGAGTTCGTCACAAGAGAAAACACAGAGA
GTAAAAGGCAGCACTACAGGAGAAAAAAGTTAGTACTAAAATAACAACAT
AACAACCCTAACATACACACACCTGACAACAGAGCCTTGACTAGAAGGGA
CAAAATTTGATAAAATAAAAGGAGAATCAGACCTTTCTATCTGTCATCAA
CAGGAGGAATTCCTGAGGATGTAAACAAGCTCTGCAGCCTTATCTATCAA
GCATTTGTACTTGATGTGTCTAAACAGTTGTCCACACAACATTCGCAGAG
TCTCCATCCTTCTCAGCCTCTCATAGAACAGTCAGAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_g19.b1 MSMg01no526_g19.b1 CHROMAT_FILE:
MSMg01no526_g19.b1 PHD_FILE: MSMg01no526_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:20 2005
         (690 letters)



>mm_chr7_78158095_78159184
          Length = 1090

 Score = 1207 bits (624), Expect = 0.0
 Identities = 671/688 (97%), Gaps = 4/688 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcagcttatgaacacctatggagaagcactttccttgtaattatacctatgaa 64
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gaattcttcagcttatgaatgcctatggagaagcactttccttgtaattatacctatgaa 831

                                                                       
Query: 65  agatgactgtccctttggagtcccctgttattgtttccaggcaaaccatttatactttcc 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 agattactgtccctttggagtcccctgttattgtttccaggcaaaccatttatactttcc 771

                                                                       
Query: 125 aattatgtgcacctcagtgatatgaagcttgaggaagtgcatttcggttaagacacccaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 770 aattatgtgcacctcagtgatatgaagcttgaggaagtgcatttcggttaagacgcccaa 711

                                                                       
Query: 185 gcttg--tctgtcttttctgggactcactgaaacagtggcaagaccttgaaacttctcta 242
           |||||  ||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gcttgcttc--tcttttctgggactcactgaaacagtggcaagaccttgaaacttctcta 653

                                                                       
Query: 243 ggttgaggatttagtgtaataatcctttgagagttctcaatggtgaaacttgagaaaata 302
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 652 ggttgaggatttagtgtaataatcctttgagagttctcaatggtgaaacttgagaaaaga 593

                                                                       
Query: 303 agtatttgtgggacaaagagcagaaagccagtgagcctcatctttcaccaagccacaagt 362
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agtatctgtgggacaaagagcagaaagccagtgagcctcatctttcaccaagccacaagt 533

                                                                       
Query: 363 agggaagttatacacacagagaatttgggaagcaaaaaagagcaggagttggccttgaac 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agggaagttatacacacagagaatttgggaagcaaaaaagagcaggagttggccttgaac 473

                                                                       
Query: 423 catagaaatatgagagctttggatacaagacaggaaccaggctttaaatcctaaacatgg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 catagaaatatgagagctttggatacaagacaggaaccaggctttaaatcctaaacatgg 413

                                                                       
Query: 483 tgtgagatgttgctcacatgcagagcccagatcaggtttgtgaaaggggagtgtgtgggt 542
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 412 tgtgagatgttgctcacacgcagagcccagatcaggtttgtgaaagaggagtgtgtgggt 353

                                                                       
Query: 543 gtcagaagagaagacagtgtgctcacagaggagttagggatgctgggggatggagaaaga 602
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gtcagaagcgaagaccgtgtgctcacagaggagttagggatgctgggggatggagaaaga 293

                                                                       
Query: 603 agcaacatctaagatgaaaacaaaaacatcgagagtttcacagcctgacggaaactgtgc 662
           ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 292 agcaacatctacgatgaaaacaaaaacatcgagagtttcacagcctgatggacactgtgc 233

                                       
Query: 663 atataaaaaggcacagcaactacaaaga 690
           ||||||||||||||||||||||||||||
Sbjct: 232 atataaaaaggcacagcaactacaaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)