Query= MSMg01no526_n08.b1 MSMg01no526_n08.b1 CHROMAT_FILE:
MSMg01no526_n08.b1 PHD_FILE: MSMg01no526_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:53 2005
(595 letters)
>mm_chr7_119882479_119883473
Length = 995
Score = 971 bits (502), Expect = 0.0
Identities = 514/518 (99%)
Strand = Plus / Minus
Query: 78 gaaggctcactctctctctcctttgcctgcttaccatgtgggaccgagtaactgttagat 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 gaaggctcactctctctctcctttgcctgcttaccatgtgggaccgagtaactgttagat 936
Query: 138 ccttggacttccattcacagctgctactgaccattgttgggagttagactgcagactgta 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 ccttggacttccattcacagctgctactgaccattgttgggagttagactgcagactgta 876
Query: 198 agtcatcaataaattcctttactatatagagactaccccataagttctgtgactctagag 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 agtcatcaataaattcctttactatatagagactaccccataagttctgtgactctagag 816
Query: 258 aaccctgactaatacacctaagacagaataatcataaatctcaatggcatggagagccca 317
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aaccctgactaatacaccttagacagaataatcataaatctcaatggcatggagagccca 756
Query: 318 agggtgtctgcttggatcacaagggactttggggaacgcttgaatctccaactagcctct 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 agggtgtctgcttggatcacaagggactttggggaacgcttgaatctccaactagcctct 696
Query: 378 gagtagagcttaagcaaagggtaagaaatgctgagatttggtgctgagcaggacgcaggt 437
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gagcagagcttaagcaaagggtaagaaatgctgagatttggtgctgagcaggacgcaggt 636
Query: 438 agaggccagccttctgccagaaccctccccatctggacttacccacagcagcactagaag 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agaggccagccttctgccagaaccctccccatctggacttacccacagcagcactagaag 576
Query: 498 caaagcactgagcacagccaagggctggacacacggctatgcggctgtaaacccaactct 557
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 575 caaagcactgagcacagccaagggctggacacacgactatgcgtctgtaaacccaactct 516
Query: 558 cccactactgtaggcaaagcccggtgcttttccgtgga 595
||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cccactactgtaggcaaagcccggtgcttttccgtgga 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_n08.g1 MSMg01no526_n08.g1 CHROMAT_FILE:
MSMg01no526_n08.g1 PHD_FILE: MSMg01no526_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:53 2005
(572 letters)
>mm_chr7_119737853_119738824
Length = 972
Score = 909 bits (470), Expect = 0.0
Identities = 496/506 (98%), Gaps = 6/506 (1%)
Strand = Plus / Plus
Query: 73 agagaagagaagagaagagatgaagcttgatagctgccaacctaaccaaacattaagtcc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agagaagagaagagaagagatgaagcttgatagctgccaacctaaccaaacattaagtcc 326
Query: 133 aagttcctgtctcaagaaaataaggtagagagcaataggccagggctcattcactggcct 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagttcctgtctcaagaaaataaggtagagagcaataggccagggctcattcactggcct 386
Query: 193 ccatacatactcatatgagatctctctctctctctctctctctctctctc-t-cacacac 250
||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||||
Sbjct: 387 ccatacatactcatatgagatctttctctctctctctctctctctctcacatacacacac 446
Query: 251 acacacacacacac--ac--acacacatggacacacgcacagtaaatatgtaaatattta 306
|||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 447 acacacacacacacatacatacacacatgcacacatgcacagtaaatatgtaaatattta 506
Query: 307 tccaaagtgagagtgaagaagaggaggattggatagaaatgatctgctgtgaagatagct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tccaaagtgagagtgaagaagaggaggattggatagaaatgatctgctgtgaagatagct 566
Query: 367 caagggcagtgggagagcttcattgagagacaaggttgcctgctctggcggcctctgtga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 caagggcagtgggagagcttcattgagagacaaggttgcctgctctggcggcctctgtga 626
Query: 427 aagaactaggcgaagtcagtcacagcccctctaagtcccactagttcagttcagttgctt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aagaactaggcgaagtcagtcacagcccctctaagtcccactagttcagttcagttgctt 686
Query: 487 ctggtcatataagcccacggagatggagaaggaggtataagaacaccacagcccccattc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctggtcatataagcccacggagatggagaaggaggtataagaacaccacagcccccattc 746
Query: 547 aagctacacactgaaggagatggcac 572
||||||||||||||||||||||||||
Sbjct: 747 aagctacacactgaaggagatggcac 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
