BAC Information

Click to search

BAC

Clone NameMSMg01-527I04
Chromosome7 (Build37)
Map Location 65,602,980 - 65,603,637
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg3, Gabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527I04.T7 (MSMg01no527_i04.b1)MSMg01-527I04.TJ (MSMg01no527_i04.g1)
ACCAG596848AG596849
length736738
length of high quality
(start - end)
689 (41 - 729)658 (81 - 738)
definitionCHROMAT_FILE: MSMg01no527_i04.b1 PHD_FILE: MSMg01no527_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:46 2005CHROMAT_FILE: MSMg01no527_i04.g1 PHD_FILE: MSMg01no527_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTGACGTAGAGGGTGCGGGCGCTAGACGACGTCCTATCGGGAGAGGATC
CGCGGAATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAA
AATGTTCAGCATCATTAATCATCAGGGAAATGCAAATCAAAATAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGA
CAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCTATTGTT
GGTGGGATTACAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAATTC
CTCAGAAAATTGGACTTAGTACTACCAGACGATCCCACAATACCTCTCCT
GGGCATATATCCAGAAAGTGTTCCAACTGGTAAGAAGGACACATGCTTCA
CTGTGTTCATAGCAGTCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATTTGGTACATTTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
GCAAATGGATGGATCTGGAGGGCATCATCTTGAGTGAGGTAACCCAATCA
CAAAAGAACTCACATGATATGTACTCATTGATAAGTGGATATTAGCCAAG
GTACTTAGAATACCCAAGATATAAGATACAATTTGTGAAACTCATGAAAC
TAAAGAAGAACAAAAACCATAGTGTAGACACTTTGN
AAAACTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGACATATTCAAACTTGA
TTTACTTGCTTTTAGATGAAGACACAGACATACATTTTCTCATTTAGAGG
ATTAGGTAGAGAAAGACCATTTCCTGTCCTTTCCTTTCCCAGAATCATTT
ATCTTTCAAGCTGCTACAGATTTCTACTGCACGATGGCAGCTGCTGTAAG
AAATGGGGAGGGTGTGGGGCCTCACATAGTGCCACGTTTCATCTCTCATC
TGGCTATCTTTATCCACTCACAGATCTGAGCCTTTAATAATGCCTTACTA
TGCTCAAATCCTTCACACAGGAATGAGGTAGGAGAGTTGAATGGTTTCTT
TCCTCCCTCCTATCTATGTACAGTCTGCGTGTACGTGCATACATGTGTGT
ATGTTTTTATGTCAGAGGTTGACATCAAATAGTTTTGATAGCCTTATTTT
GTGAGATATTCTCTGAGCCTAGACTTCACTGATCACCCAGGGAGGTCCAG
ATATCTGACTATGTCAGGTCCCACTGTATAGGGATAAAGGCACAGGAATA
CATTTGAACTTTTTGATAACACAGGTGCTAGGGATCCAGAGTTATGTCCT
CATGTTGTAGAGCCAAGCTAAGCCATATTCTCAACTCCCAGTTTCTCTTT
GTGATATAAAGACATAAACATATGGGGAGCTAAGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_i04.g1 MSMg01no527_i04.g1 CHROMAT_FILE:
MSMg01no527_i04.g1 PHD_FILE: MSMg01no527_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:46 2005
         (658 letters)



>mm_chr7_65602780_65603837
          Length = 1058

 Score = 1265 bits (654), Expect = 0.0
 Identities = 657/658 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgacatattcaaacttgatttacttgcttttagatgaagacacagacatacattttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 catgacatattcaaacttgatttacttgcttttagatgaagacacagacatacattttct 799

                                                                       
Query: 61  catttagaggattaggtagagaaagaccatttcctgtcctttcctttcccagaatcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 catttagaggattaggtagagaaagaccatttcctgtcctttcctttcccagaatcattt 739

                                                                       
Query: 121 atctttcaagctgctacagatttctactgcacgatggcagctgctgtaagaaatggggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atctttcaagctgctacagatttctactgcacgatggcagctgctgtaagaaatggggag 679

                                                                       
Query: 181 ggtgtggggcctcacatagtgccacgtttcatctctcatctggctatctttatccactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 678 ggtgtggggcctcacatagtgccacgtttcatctctcatctggctatctttatccgctca 619

                                                                       
Query: 241 cagatctgagcctttaataatgccttactatgctcaaatccttcacacaggaatgaggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cagatctgagcctttaataatgccttactatgctcaaatccttcacacaggaatgaggta 559

                                                                       
Query: 301 ggagagttgaatggtttctttcctccctcctatctatgtacagtctgcgtgtacgtgcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggagagttgaatggtttctttcctccctcctatctatgtacagtctgcgtgtacgtgcat 499

                                                                       
Query: 361 acatgtgtgtatgtttttatgtcagaggttgacatcaaatagttttgatagccttatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acatgtgtgtatgtttttatgtcagaggttgacatcaaatagttttgatagccttatttt 439

                                                                       
Query: 421 gtgagatattctctgagcctagacttcactgatcacccagggaggtccagatatctgact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtgagatattctctgagcctagacttcactgatcacccagggaggtccagatatctgact 379

                                                                       
Query: 481 atgtcaggtcccactgtatagggataaaggcacaggaatacatttgaactttttgataac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgtcaggtcccactgtatagggataaaggcacaggaatacatttgaactttttgataac 319

                                                                       
Query: 541 acaggtgctagggatccagagttatgtcctcatgttgtagagccaagctaagccatattc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acaggtgctagggatccagagttatgtcctcatgttgtagagccaagctaagccatattc 259

                                                                     
Query: 601 tcaactcccagtttctctttgtgatataaagacataaacatatggggagctaagggaa 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcaactcccagtttctctttgtgatataaagacataaacatatggggagctaagggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)