BAC Information

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BAC

Clone NameMSMg01-531K21
Chromosome7 (Build37)
Map Location 18,878,695 - 18,879,370
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1
Downstream genePsg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531K21.T7 (MSMg01no531_k21.b1)MSMg01-531K21.TJ (MSMg01no531_k21.g1)
ACCAG600020AG600021
length762778
length of high quality
(start - end)		706 (46 - 751)676 (75 - 750)
definitionCHROMAT_FILE: MSMg01no531_k21.b1 PHD_FILE: MSMg01no531_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:23 2005CHROMAT_FILE: MSMg01no531_k21.g1 PHD_FILE: MSMg01no531_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAGATGCTTTCTTTATTTCAAATCTCTCTTAGATGAGTTTAGA
AACATAGCAGTGCAAGTGACAATGAAGATGATCTCATTCATAATTAAAGT
ATGACACTAATCTTAAGTCACCCAAAGAATACTAAAGTACTGCAGTCCTG
TATTCACACTGGGAGCAAGTTTTTCATTTAAAAATGTCATAAAACCCTGA
GCACCTGGTCAGATCTCCAGGAGGGGAGAAAATCAAGGTGACCTGCTGTT
ACCCCTGAGAGCACTTGCTTTGAGGTTTGTGTCTGATCCAAATATTCCTT
ACTCAGTTTCTCCAAGTTTTGTGATATTTAATATAGTAAAAAGCATTGTC
TTGAGCTTATTATGGCATAGTAGTAGTTTTTTGCTGCTGACATTGTAATT
AGCATATTTTCAACAACAATTAGGAAACAATGCCTTATATATGTGCCTTG
GGGGTTGAAGGGACAAAGTAGTAGCTGTCATCTAGGAACTCAAAAAATAA
TCCATAATTTTCAGCCTAATTTCTATTTGTATATTGATCACAAACATCAC
AGAAGACATCTTTAAATCTTACTGTTACTCTACTATATCTTAATACTATT
TGGCACTGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGC
AAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTATACAACGTGAGT
TCCAGGACAGCC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAGCTGCTACAGAGACTCAGTATGT
ACTGTTTTGGATTTGTCCTTCCTGTTTTGACTTCTGTCCAAATGCACTCT
GTTCCTCTCTTCGATGTATACCTTTCCAATCTGTTGCCATTCTGATCTCT
CCCTCTCTCATTTATGATATTACTCTTTCCTTGTTTTCTTTTTCCTACTA
TAATAAGACACTCTGCTTGGCTTCTTAGACTCTCACATCATCAGCCTCTC
AAGGATTGATGCTCTGCTGGTCAAGATGTTGGCAGGAGACCCAGCCTCCC
CACCCCCACCCCCCGCGCACACAAAGAACGCCCTGGGAAAACAGTGTGGG
GAGCAAAGAGTCAGCATGAAGGGACTACTTATTGCCTACCTAGGGGTCTT
CAAGAGGAAAACTCAGAGATTAGGCAAACCATCAGACCCACAATCAGGTC
CCTGTCCTGGGATGGTCCCTCTCTGTGCCTTAGAGCTTGTAGAACTGGCT
TTCTCTTCTATGAAACAAGAAGCTACGTTCCAATGTGTAGAGAGAACCTC
TTATAAGTATCACATGTCAATAAAAAAAGCCTATGGCCAATGAGTTGAGG
CATTTGTTACACATACATCTTACATCACGTGATTTGTTACATTATGCATT
TGTTACACATTTACAGCTAGAATTAAAGCATCACAAATATGTCTTGTTGG
AGAATTTTCCCCAAGTTTGCTTCAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_k21.g1 MSMg01no531_k21.g1 CHROMAT_FILE:
MSMg01no531_k21.g1 PHD_FILE: MSMg01no531_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:23 2005
         (676 letters)



>mm_chr7_18878495_18879570
          Length = 1076

 Score = 1268 bits (656), Expect = 0.0
 Identities = 671/676 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagctgctacagagactcagtatgtactgttttggatttgtccttcctgttttgacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagctgctacagagactcagtatgtactgttttggatttgtccttcctgttttgacttc 260

                                                                       
Query: 61  tgtccaaatgcactctgttcctctcttcgatgtatacctttccaatctgttgccattctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtccaaatgcactctgttcctctcttcgatgtatacctttccaatctgttgccattctg 320

                                                                       
Query: 121 atctctccctctctcatttatgatattactctttccttgttttctttttcctactataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctctccctctctcatttatgatattactctttccttgttttctttttcctactataat 380

                                                                       
Query: 181 aagacactctgcttggcttcttagactctcacatcatcagcctctcaaggattgatgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagacactctgcttggcttcttagactctcacatcatcagcctctcaaggattgatgctc 440

                                                                       
Query: 241 tgctggtcaagatgttggcaggagacccagcctccccacccccaccccccgcgcacacaa 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tgctggtcaagatgttggcaggagacccagcctccccacccccatcccccgcgcacacaa 500

                                                                       
Query: 301 agaacgccctgggaaaacagtgtggggagcaaagagtcagcatgaagggactacttattg 360
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 agaatgccctgggaaaacagtgtggggagcaaagagtcagcatgaaggaactacttattg 560

                                                                       
Query: 361 cctacctaggggtcttcaagaggaaaactcagagattaggcaaaccatcagacccacaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctacctaggggtcttcaagaggaaaactcagagattaggcaaaccatcagacccacaat 620

                                                                       
Query: 421 caggtccctgtcctgggatggtccctctctgtgccttagagcttgtagaactggctttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggtccctgtcctgggatggtccctctctgtgccttagagcttgtagaactggctttct 680

                                                                       
Query: 481 cttctatgaaacaagaagctacgttccaatgtgtagagagaacctcttataagtatcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttctatgaaacaagaagctacgttccaatgtgtagagagaacctcttataagtatcaca 740

                                                                       
Query: 541 tgtcaataaaaaaagcctatggccaatgagttgaggcatttgttacacatacatcttaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtcaataaaaaaagcctatggccaatgagttgaggcatttgttacacatacatcttaca 800

                                                                       
Query: 601 tcacgtgatttgttacattatgcatttgttacacatttacagctagaattaaagcatcac 660
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 801 tcacgtgatttgttgcattatgcatttgttacacatttacagctagaactaaagcatcac 860

                           
Query: 661 aaatatgtcttgttgg 676
           ||||||||||||||||
Sbjct: 861 aaatatgtcttgttgg 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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