BAC Information

Click to search

BAC

Clone NameMSMg01-532I18
Chromosome7 (Build37)
Map Location 6,761,951 - 6,762,349
singlet/doubletsinglet
Overlap geneUsp29
Upstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532I18.T7 (MSMg01no532_i18.b1)MSMg01-532I18.TJ (MSMg01no532_i18.g1)
ACCAG600680AG600681
length734735
length of high quality
(start - end)		609 (53 - 661)611 (86 - 696)
definitionCHROMAT_FILE: MSMg01no532_i18.b1 PHD_FILE: MSMg01no532_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:29 2005CHROMAT_FILE: MSMg01no532_i18.g1 PHD_FILE: MSMg01no532_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAGTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAGTCTGTTCTGTGGTTGCAATGTAGGTAGGAAGACC
TCCTGACGGAAGGTTAGACACAGCTAGTTAAGAGAAAACCTATCCCATTG
TTCAAGCACAGCGGGCCTTCATGAAAGGCAGGGGAAAGAGAAAAGGTAGA
AAGAGAGAGGGAGAGGCTGGCCGTGGCCACAAGGAGAAAGGGAGAAGAAA
AAGAGAGAAAAGAAAGGCTAGAAAGTAAGAAAGCTTAAAGAGAGTGAGGA
GGGGCCAAGCAGCCCCTCTTATAGTGGGCTTGTTATCTTGCTGTTGCTAG
GTAACTGTGAGGAGGAGTCTCGACAGAAGGCCAGAAGCTTGGGACATTGT
CTATTTGACTACTAGCCATATGCCTTCTCCTGTGGGGGCTGTGAGTGTGG
TAACTTTGACAGGAGCCAGGGGTCCAGGAGACATGACCGAACGCCTACTG
CCCCATGTAGGTGGAAATTACCACCCATTGGGTACTACCGGGGATTAAGA
CCTCAGCGCGACTGGAGACCAGGTCGTCTGTGCATAGCCCACTGCCCCAC
AACTATACACTTAAACAGTATACCAGTCAGTGGGCTTGTTTGCAAAGGGG
CAGATGTCACTGTAATAACAGAAAATGAAGCACTGAGGTTCCCGCATTGC
AGATGTCGTCCTGGTCTCTCCAGGATGGGAGTGG

NAAATTTAACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCATGAGTTGTCT
TCTGACCTTCATACATATGTGATGGCCTGAACACACCCCACAGATAAAAA
CATGCAAAAAATAAGGACGGGTAAGATAAGAGTGAAATGAGAGAAGGTTG
TTTCAGATAGTCAGAGAACTTTCTAGGGTGACAGCAGCGGTTTGAATGAT
GGGAATGGGCATGGTGCAGAAAAAGAGCCTTCCAAAGGGCAATCCAGCAA
GTGCATGTTGTTTGACACTATTCTTGAGTAAACACGAGCAAATGTCTGCT
CACCCCAGACAAGAAACCATCAGCAGGCCGAATCAGGATACCACCTGTGA
TAGCTAATTTTGCTTTCGAACTTGACTGCATCTGAGATCCACTAAAACAC
AAGCTGTTGAGTACTCTGTGAATGACTTCCTTGGCTGGCTTACTTGAAAT
GGGAATTCACCCTAAATCTGGATGGCTCCTTCTAATGGCCATCCAATGAC
AAGGACATGAAGGAAGGGATCTTTGCTTTTTGCCTTCTTACCCTCACTCT
CCGCAGAAAGAATTGTTGTGGCATTCCTTTATCAACAACTCTTGAGATCT
CATTATAGACTGAAGGCAAGCAGCTCTTCAGGAGTCCTCTAGACCAACAA
TTCTCAACCTGTGGGTCACAACCCTTTTTGGGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_i18.g1 MSMg01no532_i18.g1 CHROMAT_FILE:
MSMg01no532_i18.g1 PHD_FILE: MSMg01no532_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:29 2005
         (611 letters)



>mm_chr7_6761930_6762940
          Length = 1011

 Score =  702 bits (363), Expect = 0.0
 Identities = 390/399 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatgagttgtcttctgaccttcatacatatgtgatggcctgaacacaccccacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attcatgagttgtcttctgaccttcatacatatgtgatggcctgaacacaccccacagat 361

                                                                       
Query: 61  aaaaacatgcaaaaaataaggacgggtaagataagagtgaaatgagagaaggttgtttca 120
           ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 360 aaatacatgcaaaaaataaagacgggtaagataagagtgaaatgagagaaggttatttca 301

                                                                       
Query: 121 gatagtcagagaactttctagggtgacagcagcggtttgaatgatgggaatgggcatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 300 gatagtcagagaactttctagggtgacagcagcggtttgaatgatgggaatgggcatggc 241

                                                                       
Query: 181 gcagaaaaagagccttccaaagggcaatccagcaagtgcatgttgtttgacactattctt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 240 gcagaaaaagagccttccaaagggcaatccagcaagtgcatgttgtttgacactattcct 181

                                                                       
Query: 241 gagtaaacacgagcaaatgtctgctcaccccagacaagaaaccatcagcaggccgaatca 300
           | ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct: 180 gggtaaacacgagcaaatgtctgctcaccccagacaagaaaccgtcggcaggccaaatca 121

                                                                       
Query: 301 ggataccacctgtgatagctaattttgctttcgaacttgactgcatctgagatccactaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ggataccacctgtgatagctaattttgctttcgaacttgactgcatctgagatccactaa 61

                                                  
Query: 361 aacacaagctgttgagtactctgtgaatgacttccttgg 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 60  aacacaagctgttgagtactctgtgaatgacttccttgg 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |