Query= MSMg01no533_g24.b1 MSMg01no533_g24.b1 CHROMAT_FILE:
MSMg01no533_g24.b1 PHD_FILE: MSMg01no533_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:38 2005
(428 letters)
>mm_chr7_30627679_30628507
Length = 829
Score = 679 bits (351), Expect = 0.0
Identities = 413/445 (92%), Gaps = 23/445 (5%)
Strand = Plus / Minus
Query: 5 gaattctgataacataattaaat---gagtgtattggacaggaaatttcctgg-aaaaaa 60
|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 651 gaattctgataacagaattaaatgaggagtgtattggacaggaaatttcctggaaaaaaa 592
Query: 61 tataaattggtg------------tgtgtgtatctgtgtacagtgtgtgtgtttcacaag 108
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 591 tataaattggtgtgtgtgtgtatctgtgtgtatctgtgtacagtgtgtgtgtttcacaag 532
Query: 109 gtacatgtggagaagtaagctctcttctaccatgggagtttcagagatcaagttgaagtt 168
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 531 gtacatgtggagaagtaagctctcttctaccatgggggtctcagagatcaagttgaattt 472
Query: 169 gtcacactagaggccttcaaggcttgggctccaactttttgtagtttctttctctgggca 228
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 471 gtcacactagaggccttcaaggcttgggctccaactttttgtagtttctttttctgggca 412
Query: 229 catgagccca-tgtttaagggaatgaaaataatagactggatatttacctggaatgttaa 287
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 catgagcccagtgtttaagggaatgaaaataatagactggatatttacctggaatgttaa 352
Query: 288 agcttttctttaagtaaatattacaaagttaatttttagttcagttgaaatttttcatta 347
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 351 agcttttctttaagtaaatattacaaggttaatttttagttcagttgaaaattttcatta 292
Query: 348 tttttaacatgtatggttg----tttttcctgtatgtatgtgtgtgtgtgtatgtatatg 403
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||
Sbjct: 291 tttttaacatgtatggttggttgtttttcctgtgtgt--gtgtgtgtgtgtatgtatatg 234
Query: 404 tgtgtgtatgtatgtatgtatatgt 428
||| |||||||||||||||||||||
Sbjct: 233 tgtatgtatgtatgtatgtatatgt 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 829
Length adjustment: 9
Effective length of query: 419
Effective length of database: 820
Effective search space: 343580
Effective search space used: 343580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_g24.g1 MSMg01no533_g24.g1 CHROMAT_FILE:
MSMg01no533_g24.g1 PHD_FILE: MSMg01no533_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:39 2005
(516 letters)
>mm_chr7_30508843_30509758
Length = 916
Score = 917 bits (474), Expect = 0.0
Identities = 506/518 (97%), Gaps = 4/518 (0%)
Strand = Plus / Plus
Query: 1 aaggccagcccgggtcaagtaacactatcctatatcatgaaaggaagagtgcggggccag 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aaggccagcccgggtcaagtaacactatcctatatcctgaaaggaagagtgcggggccag 260
Query: 61 agagattggctgactcaatggttagagtgtgtaactgttcttctagatgaccaaagcatg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 agagattggctgactcaatggttagagtgtttaactgttcttctagatgaccaaagcatg 320
Query: 121 attgccagcatctatgtcaagccacaatagcttgtaactccaatcccaggaattcatcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgccagcatctatgtcaagccacaatagcttgtaactccaatcccaggaattcatcac 380
Query: 181 cctcttccgacctccataggcaactgcatgcacatgcatagacctattaaaaataagatg 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cctcttccgacctccataggcaactgcatgcacatgtatagacctattaaaaataagatg 440
Query: 241 aatgctttttttaaaagagagaataactactattagacacagggttcttattggaggata 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 aatgctttttttaaaagagagaataactattattagacacagggttcttattggaggata 500
Query: 301 ataggaacgttccggggaaagataatgaggttagtgtgattgtttgagtgaggtactgtt 360
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 ataggaacattccagggaaagataatgaggttagtgtgattgtttgagtgaggtattgtt 560
Query: 361 tgaacacccc--aggctcctatgtttgaatgcttggtccttagctgtgggtctgactgaa 418
||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagc--cccttaggctcctatgtttgaatgcttggtccttagctgtgggtctgactgaa 618
Query: 419 taggattacatatggccttcatggaggagatgtgtcaccaggggtggtaggccttgaggt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 taggattacatatggccttcatggaggagatgtgtcaccaggggtggtaggccttgaggt 678
Query: 479 ctgcaccattcctagttcgctttctctgcttcctgctt 516
||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgcaccattcctagttcgctttctctgcttcctgctt 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
