Query= MSMg01no534_j24.b1 MSMg01no534_j24.b1 CHROMAT_FILE:
MSMg01no534_j24.b1 PHD_FILE: MSMg01no534_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:12 2005
(572 letters)
>mm_chr7_148160846_148161824
Length = 979
Score = 851 bits (440), Expect = 0.0
Identities = 526/568 (92%), Gaps = 34/568 (5%)
Strand = Plus / Minus
Query: 26 ctacacagagaaacacc-gtctc--------gaaaaaaaaccgaaaagcaaac-aaacaa 75
|||||||||||||| || ||||| |||||||| |||| |||| ||| ||
Sbjct: 977 ctacacagagaaac-cctgtctcaaaaaaaaaaaaaaaaa---aaaa--aaacaaaaaaa 924
Query: 76 ac---aaacaaacaaaaattgaggtaaaatataaatactaaatgaaatgaaatgaggaag 132
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 acgaaaaacaaacaaaaattgaggtaaaatataaatactaaatgaaatgaaatgaggaag 864
Query: 133 taaagaagaagcaaagtaaaagaaaggaaaaaacaagttaggaaagaggagaaaaggaca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 taaagaagaagcaaagtaaaagaaaggaaaaaacaagttaggaaagaggagaaaaggaca 804
Query: 193 agagataaacaacacccccccccccaaaataaaaaaaaggttaggtcataaaaaattcct 252
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 803 agagataaacaaca--ccccccccca----aaaaaaaaggttaggtcataaaaaattcct 750
Query: 253 tttcccaaagtctggcagttagacaaaagccagattccctcagggatttaagaagatagt 312
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tttctcaaagtctggcagttagacaaaagccagattccctcagggatttaagaagatagt 690
Query: 313 tattgctcaaggattcctgacttgggcaaaaaca-----acccccccccc-ttaacaaat 366
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 689 tattgctcaaggattcctgacttgggcaaaaacaaaaacaccccccccccattaacaaat 630
Query: 367 gcttgtggtgctattagcatatggagcctgtcccccc-cc-cccccagtccctacacttt 424
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 629 gcttgtggtgctattagcatatggagcctg-ccccccaccgcccccagtccctacacttt 571
Query: 425 agtacttgttgacagtcatcctggcgggccccctacccgaaacctttccagctcctaagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agtacttgttgacagtcatcctggcgggccccctacccgaaacctttccagctcctaagg 511
Query: 485 ttcccttcccccaccttgtccaactcctctctaacaggccagatgaataaaaatgaggac 544
|||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 510 ttccctccccccacctcgtccaactcctctccaacaggccagaagaataaaaatgaggac 451
Query: 545 agcgattgctcttaggcatggttgagaa 572
||||||||||| ||||||||||||||||
Sbjct: 450 agcgattgctcctaggcatggttgagaa 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 979
Length adjustment: 10
Effective length of query: 562
Effective length of database: 969
Effective search space: 544578
Effective search space used: 544578
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_j24.g1 MSMg01no534_j24.g1 CHROMAT_FILE:
MSMg01no534_j24.g1 PHD_FILE: MSMg01no534_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:12 2005
(573 letters)
>mm_chr7_147997082_147998054
Length = 973
Score = 1077 bits (557), Expect = 0.0
Identities = 569/573 (99%)
Strand = Plus / Plus
Query: 1 tctggtgcagtgtgaggtgtgagcagtggttgaaggctttgctgcactaatcacctttgt 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tctggtgcagtgtgaggtgtgaacagtggttgaaggctttgctgcactaatcacgtttgt 260
Query: 61 agggtttctctctagaatgcaccctctgatgctctctcagacttacattcatggcaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtttctctctagaatgcaccctctgatgctctctcagacttacattcatggcaaagg 320
Query: 121 ctttgccacactcgttacatttgtaaggtttctctccactgtgaattctgtgatgtcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgccacactcgttacatttgtaaggtttctctccactgtgaattctgtgatgtcttt 380
Query: 181 tgagatctgaacttttggtaaaagctttgccacattccttgcactcatagggcttctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagatctgaacttttggtaaaagctttgccacattccttgcactcatagggcttctctc 440
Query: 241 ctgtatgagttctatggtggtaattgaacgctgaaaaattgcgaaaggctttgccacatt 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtatgagttctgtggtggtaattgaacgctgaaaaattgcgaaaggctttgccacatt 500
Query: 301 ccttgcactcatagggcttctctccagtatgaactcgctggtgctctgtaagctttgcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgcactcatagggcttctctccagtatgaactcgctggtgctctgtaagctttgcaa 560
Query: 361 tctgcgtgaaggctttctcgcactctttacacttatagggcttctctccagtgtgaacta 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 tctgcgtgaaggctttctcgcactctttacacttgtagggcttctctccagtgtgaacta 620
Query: 421 cttgatgttgtttcaggcttaacccactgttaaaggctttgccgcactcgttacacttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgatgttgtttcaggcttaacccactgttaaaggctttgccgcactcgttacacttga 680
Query: 481 acggtttctcgccagtgtggacgttttggtgttgagtaagctttgaaatatcaacgaagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acggtttctcgccagtgtggacgttttggtgttgagtaagctttgaaatatcaacgaagg 740
Query: 541 ttttcccacactgcttgcacttgtggggcttcg 573
|||||||||||||||||||||||||||||||||
Sbjct: 741 ttttcccacactgcttgcacttgtggggcttcg 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
