BAC Information

Click to search

BAC

Clone NameMSMg01-534P04
Chromosome7 (Build37)
Map Location 130,960,223 - 130,960,611
singlet/doubletsinglet
Overlap genenone
Upstream gene4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534P04.T7 (MSMg01no534_p04.b1)MSMg01-534P04.TJ (MSMg01no534_p04.g1)
ACCAG602513AG602514
length716715
length of high quality
(start - end)
606 (33 - 638)414 (71 - 484)
definitionCHROMAT_FILE: MSMg01no534_p04.b1 PHD_FILE: MSMg01no534_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:37 2005CHROMAT_FILE: MSMg01no534_p04.g1 PHD_FILE: MSMg01no534_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATTAAGGGGCGCTATTCGACTCCTATTCGGAGAGGATCCGCGGAAT
TCTTTCACTATTAGTGTCTCTGAAATTGTTGTTGTCGCATGGGTGTACTT
GGAATTCTCCAGTGAAATAGGATATGTGGGATAATAAGTATACAAAGGAC
AGATAAGCTACTTAAGAAGATTCCTACTGGGAAATTGTCTTACAGACTTA
TGGAGGCCAAGAAGTCCTATGATCTATGGTCTGCCGAACATGAGCTCTGG
AGAGGAGGTGGTGCAATTCAGTATGAGCCTCAAGGCCCAAGAACCAGGAA
CTGATGCCTGAAGTCAGTAGATACACATCCTGGCTCAAGAAGATGAAGGA
TTTTGTCTTCAGTCTTTTGCTTCTACGTGGGGACTTCAATGAATTAGACA
ATGTTTTCTCATGCTGGTGAGGCATACATTTTTTTACTCAGTTTACTGAC
TCAAATGTTAATATTGTCTATAAATACTGTCATAGACCCAGCAGAAACAG
TATTTTATTCTTTTGCGAGAGCTCTACATTTTGATACTCTAATCAAAACA
TCTACAACATAACCTCTGTACTTACGGCTCAGGGAACATCATGGAAGAGA
AGGAGGAAAAATTACAATATCCAGAGGACATCTGCTGAGAGATAGTGTCT
TCTATGAATGACTAGGGAGTGTTAACCATGAAATCTTAAGTAGCTGCCTA
AATAAGTGCTGCACTT
CAATGCTATGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTATTTTCTCCGCGGAATTCCTTAGGATTCATCTTCCAACCATTC
TTTTGACTTGTCCTCTAGTCTGAAAGGCTTATCTTTACTATTGAAGCATT
TGCTGGCATGGGGTTATTTCATTCCTCCCTGTGGCCCACAGTTGTTTTTA
ATACTGCAATATCTCCTCCAATCTCATTGTGAACATTCATTAGAACTTAT
TTCAAGTGTCTCTCCTGTCCCTTGCAAGATGTCTCTCTCCTCCAGTAGTC
TGTGTCATGTTTGATCTTTTGATGTTCTTATTTGTTGGAGGACCAAAGCA
GTTCAGTCAGTAACAAGCACTGACAGACCAGTTGACTAGCTCTGCCAACT
CATTCTAAGTAAAAGGGTTTTGTTTTTGTTTTTGTTGTTTGTTTGTTTGT
TTGTTTGTTTGTTTGTTTAAGAAAGCTGAAGACAGAGAGGATCCTGATGA
AAACAAGGTCCTTAGACAGGCCCAAAGTGTGATCCAGTTCAAAAGGAGGT
CCCAAGGCCTGACACTATCACTGAGGCTATGGAGTGCTCACAATAAGGGA
CCTAGTATGACTGCACTCTGGAATACCCTACAAGCAGCTGAAAGAAACAG
AGGCAGATAGTTGTCCCCCACCTATGGACAGAAGCACATGATCCTTGCTC
TTGAATTAGGTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_p04.g1 MSMg01no534_p04.g1 CHROMAT_FILE:
MSMg01no534_p04.g1 PHD_FILE: MSMg01no534_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:37 2005
         (414 letters)



>mm_chr7_130959875_130960688
          Length = 814

 Score =  630 bits (326), Expect = 0.0
 Identities = 381/414 (92%), Gaps = 25/414 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccttaggattcatcttccaaccattcttttgacttgtcctctagtctgaaaggctt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aattccctaggattcatcttccaaccattcttttgacttgtcctctagtctgaaaggctt 678

                                                                       
Query: 61  atctttactattgaagcatttgctggcatggggttatttcattcctccctgtggcccaca 120
           |||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atctttcctattcaagaatttgctggcatggggttatttcattcctccctgtggcccaca 618

                                                                       
Query: 121 gttgtttttaatactgcaatatctcctccaatctcattgtgaacattcattagaacttat 180
           ||||||        ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 617 gttgtt--------tgcaatatctcctccaatctcattgtgaacattcattagaatttat 566

                                                                       
Query: 181 ttcaagtgtctctcctgtcccttgcaagatgtctctctcctccagtagtctgtgtcatgt 240
           |||||||||||||             ||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcaagtgtctct-------------agatgtctctctcctccagtagtctgtgtcatgt 519

                                                                       
Query: 241 ttgatcttttgatgttcttatttgttggaggaccaaagcagttcagtcagtaacaagcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttgatcttttgatgttcttatttgttggaggaccaaagcagttcagtcagtaacaagcac 459

                                                                       
Query: 301 tgacagaccagttgactagctctgccaactcattctaagtaaaagggttttgtttttgtt 360
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 458 tgacagaccagttgactagctctgccaactcattctaagtaaaaggattttggttttggt 399

                                                                 
Query: 361 tttgttgtttgtttgtttgtttgtttgtttgtttgtttaagaaagctgaagaca 414
           ||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tttg----ttgtttgtttgtttgtttgtttgtttgtttaagaaagctgaagaca 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)