Query= MSMg01no535_f23.b1 MSMg01no535_f23.b1 CHROMAT_FILE:
MSMg01no535_f23.b1 PHD_FILE: MSMg01no535_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:10 2005
(713 letters)
>mm_chr7_144065827_144066932
Length = 1106
Score = 1218 bits (630), Expect = 0.0
Identities = 689/714 (96%), Gaps = 17/714 (2%)
Strand = Plus / Minus
Query: 5 gaattcactcttca---ttccacagtgtctgttggtggtgccatcttgtcactggtcatc 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaattcactcttcacag--ccacagtgtctgttggtggtgccatcttgtcactggtcatc 849
Query: 62 aaagaaaaatcacatgttaaggccttccaggtctatacatgtagtcaagattcatctccc 121
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 848 aaagaaaaatcacatgttaaggccttccaggtctatacatatagtcaagattcatctccc 789
Query: 122 cagaatcaagagcatttcctgtgcacaggcagaaaacacctaaaacccagcgtttataaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cagaatcaagagcatttcctgtgcacaggcagaaaacacctaaaacccagcgtttataaa 729
Query: 182 gcctttccatccaaaccttaaaggactgcatccccagcctccccctctcaggggataccc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gcctttccatccaaaccttaaaggactgcatccccagcctccccctctcaggggataccc 669
Query: 242 agtccatcttccagggtgttctgccctgtctcttaagccatctatcctcaaagccccttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agtccatcttccagggtgttctgccctgtctcttaagccatctatcctcaaagccccttt 609
Query: 302 cctactgaccttc-tttcactgaacatgcaactagtcaagaacaagcgagtttccacatc 360
|||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 608 cctactgacc-tcttttcactgaacatgcaactagtcaagaaca----agtttccacatc 554
Query: 361 tctgtgatgggagattggcactgat-ggagcaggaccacccccagccccagccccccagg 419
||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||
Sbjct: 553 tctgtgatgggagattggcactgatggga-caggac--ccccc--ccccagccccccagg 499
Query: 420 tcacacatccacaccattatcccacagatataccaagtggtgtttgagggagctcagtgt 479
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 498 tcacacatccagaccattatcccacagatctaccaagtggtgtttgagggagctcagtgt 439
Query: 480 cacttgtgaccaagtcaaagggtcatgaattctactcctcccttccatagtagccagggc 539
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 438 cacttgtgaccaagtcaaagggtcatgaattctactcctgccttccacagtagccagggc 379
Query: 540 aaactctatctagtactgtcagatgtcgccacccctattgatccctcattgcctgtcact 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 378 aaactctatctagtactgtcagatgtcaccacccctattgatccctcattgcctgtcact 319
Query: 600 ctacctttcctcccccaaatcgtctactctccacacctcacctcaaacgacctggccact 659
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctacctttcctcccccaaattgtctactctccacacctcacctcaaacgacctggccact 259
Query: 660 ctcctttcctctcctaatctgccaggtgcacacctaacttagggcttatctcca 713
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 258 ctcctttcctctcctaatctgccaggtgcacacccaacttagggcttatctcca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1106
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1096
Effective search space: 770488
Effective search space used: 770488
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no535_f23.g1 MSMg01no535_f23.g1 CHROMAT_FILE:
MSMg01no535_f23.g1 PHD_FILE: MSMg01no535_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:10 2005
(682 letters)
>mm_chr7_143911525_143912606
Length = 1082
Score = 1257 bits (650), Expect = 0.0
Identities = 674/682 (98%)
Strand = Plus / Plus
Query: 1 agcatgatgggcattgtgagaggagctgggcaggaagggatatgctcttctggatccaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 agcatgatgggcattgtgagaggagctgggcaggaagggatatgctcttctggatccaca 260
Query: 61 gatgggacacttaaagggataggagtgtctattggtcaccggagatggaaagggatagac 120
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 261 gatgggacacttaaagggataggagtgtctattggtcatcggagatagaaagggatagac 320
Query: 121 acttaaagaggagatggaaaagtttgcaaggaatgcaacgaagctttctacagtgaggtg 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttaaagaggagatggaaaagttcgcaaggaatgcaacgaagctttctacagtgaggtg 380
Query: 181 cttgacctgggtcgtaatggtaacatgggtttccaggtagacaagtgtatgtagtgattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgacctgggtcgtaatggtaacatgggtttccaggtagacaagtgtatgtagtgattt 440
Query: 241 gcaagtgtcaactgcatagcctgttgtacatacgctgtgcctccttagactctcttttca 300
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gcaagtgtcaactgcatagcttgttgtacataccctgtgcctccttagactctcttttca 500
Query: 301 tcagttcctatattttagcaataatggttacaaatggaagcttaaagacataattccacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagttcctatattttagcaataatggttacaaatggaagcttaaagacataattccacc 560
Query: 361 cacaataacttcaaaaacatgacatttaggagcaagctcaatgagatctgaagagcctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaataacttcaaaaacatgacatttaggagcaagctcaatgagatctgaagagcctct 620
Query: 421 atcattaaatcagaagtttcctgtgagaaatcttaaggagatacagatgtcaaaatagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcattaaatcagaagtttcctgtgagaaatcttaaggagatacagatgtcaaaatagca 680
Query: 481 ttgctggattagaaggctaaggctgctgacacatctttgcaaatgaattactggttcagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgctggattagaaggctaaggctgctgacacatctttgcaaatgaattactggttcagc 740
Query: 541 acagccctatgggtgtccacagtcctgtttttcataaaagttaacaagggccagagagat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagccctatgggtgtccacagtcctgtttttcataaaagttaacaagggccagagagat 800
Query: 601 ggctcagtagataaacgcttttgctgtgaaagccaagagacatgagttaaatccccagaa 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggctcagtagataaatgcttttgctgtgaaagccaagagacatgagttaaatccccagaa 860
Query: 661 cccatgtaatggaggcagggga 682
||||||||||||||||||||||
Sbjct: 861 cccatgtaatggaggcagggga 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
