BAC Information

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BAC

Clone NameMSMg01-535J24
Chromosome7 (Build37)
Map Location 63,755,257 - 63,755,797
singlet/doubletsinglet
Overlap genep
Upstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2
Downstream geneLOC100040839, Gabrg3, Gabra5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535J24.T7 (MSMg01no535_j24.b1)MSMg01-535J24.TJ (MSMg01no535_j24.g1)
ACCAG603030AG603031
length785778
length of high quality
(start - end)
619 (49 - 667)541 (80 - 620)
definitionCHROMAT_FILE: MSMg01no535_j24.b1 PHD_FILE: MSMg01no535_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:29 2005CHROMAT_FILE: MSMg01no535_j24.g1 PHD_FILE: MSMg01no535_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAACTATAATTTGTGGCCGCTAAACGACNTCCTATATTCAGAGGATCC
GCGGAATTCAAGGCCCATACCTAAACATAATAAAAGCAATCTACAGCAAA
CCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACT
AAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACA
TAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAG
GGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGA
TATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAA
ACCTGATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATGAACTCAAAC
AAGTCAATGGCCTTTCTGTACACAAAGAATAAACAGGCTGAGAAAGAAAT
TAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTG
GCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAG
TCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCC
ATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAA
AAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTC
TTCAACGAATTAGAAGGAGCAAATTGCAAATTCATCTGGAATAACAAAAA
AACTATGATAGCAAAAACTCTTCTCAAGGATTAAG
TTCACCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCACTGGGCAGAGCTTAAGTATA
GGAGACCTCAAAGCCCACCCTTACTGTGATGAACTTCCTCTACCAAGGCC
ACACCTCCTAATGGTGCCACTCCCTGTGGGCTAATCATTCAAACATATTA
GTCTGTGGGAGGCCAAACCTCTTCAAACCACTACATCTGGTAATAGAAGA
GTCAGGGCAGGCTTTGACAAGCTCTTGTGTACTGAGAGCCTGGAAGGCTG
AGCACATACTGAGAGACAAGAGAAGATCTCAGTGCTCCTTATTGCTTTGT
GTGGAAAACTCTGCACATGTCAAGAATTAAAGATGGAGGAGCTATGAATG
CCTGAGCTGTAACTGCACCCCTGAACCCCACACATATTGGTCCACATGGA
GGTTGAGGAAGTCCTACTGGGCAAAGTGTTTCAGAATAACCACTGACACA
ACCCTGGCAGACTAACAAGCTACACTGAACCCTAAAGGCCAGCCTTAAAA
TAATATTGGGGGAGATCAAAGAAAACAAGCAGAGACTTCAGTGGCGAAGG
ACTATAGGAGATGTGGAGGACTGGCAGAATGTACTTTGCTTTGTCTCCTG
AGAGCTTCTGGTTCTTCCCCCTCTGACCTCCTCCCTATCTCATTCATATG
GCTCAGATTTTTTTGTTGAGATGTGCAGAGTAGAAACTAAAGCAAGTGTT
CATTTCTGCCTGGAAATGAAAAAACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_j24.g1 MSMg01no535_j24.g1 CHROMAT_FILE:
MSMg01no535_j24.g1 PHD_FILE: MSMg01no535_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:29 2005
         (541 letters)



>mm_chr7_63755057_63755997
          Length = 941

 Score =  953 bits (493), Expect = 0.0
 Identities = 529/541 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgggcagagcttaagtataggagacctcaaagcccacccttactgtgatgaacttcct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 actgggcagagcttaagtataggagacctcaaagcccacccttactgtgatgaacttcgt 260

                                                                       
Query: 61  ctaccaaggccacacctcctaatggtgccactccctgtgggctaatcattcaaacatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 261 ctaccaaggccacacctcctaatggtgccactccctgtgggctaagcattcaaacatatg 320

                                                                       
Query: 121 agtctgtgggaggccaaacctcttcaaaccactacatctggtaatagaagagtcagggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctgtgggaggccaaacctcttcaaaccactacatctggtaatagaagagtcagggca 380

                                                                       
Query: 181 ggctttgacaagctcttgtgtactgagagcctggaaggctgagcacatactgagagacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctttgacaagctcttgtgtactgagagcctggaaggctgagcacatactgagagacaa 440

                                                                       
Query: 241 gagaagatctcagtgctccttattgctttgtgtggaaaactctgcacatgtcaagaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaagatctcagtgctccttattgctttgtgtggaaaactctgcacatgtcaagaatta 500

                                                                       
Query: 301 aagatggaggagctatgaatgcctgagctgtaactgcacccctgaaccccacacatattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagatggaggagctatgaatgcctgagctgtaactgcacccctgaaccccacacatattg 560

                                                                       
Query: 361 gtccacatggaggttgaggaagtcctactgggcaaagtgtttcagaataaccactgacac 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 561 gtccacatggaggttgaggaagtcctactgggcaaagtgtttcagaataagcactaacac 620

                                                                       
Query: 421 aaccctggcagactaacaagctacactgaaccctaaaggccagccttaaaataatattgg 480
           ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct: 621 aaccctggcagactaacaagcgacactaaaccctaaaggccagccttaaaataatattag 680

                                                                       
Query: 481 gggagatcaaagaaaacaagcagagacttcagtggcgaaggactataggagatgtggagg 540
           ||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 681 gggagctcagagaaaacaagcagagacttcagtggtgaaggactataggagaggtggagg 740

            
Query: 541 a 541
           |
Sbjct: 741 a 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)