Query= MSMg01no535_l08.b1 MSMg01no535_l08.b1 CHROMAT_FILE:
MSMg01no535_l08.b1 PHD_FILE: MSMg01no535_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:36 2005
(603 letters)
>mm_chr7_125391371_125392373
Length = 1003
Score = 1040 bits (538), Expect = 0.0
Identities = 580/600 (96%), Gaps = 10/600 (1%)
Strand = Plus / Minus
Query: 4 ggaattcaacgcctctggcctccgagaacacatgcgctcatgtatacatacccccaccat 63
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 623 ggaattcaacgcctctggcctccgagaatacatgcgctcatgtatacatacccccaccat 564
Query: 64 aaccacatacacacaaaatcaaataaaccttaaaaaaaaagaacgaggctctcaatttcc 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaccacatacacacaaaagcaaataaaccttaaaaaaaaagaacgaggctctcaatttcc 504
Query: 124 actcccttatcctccggaggtttatcattgcctttataattcacagtgcttggagggcgg 183
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attcccttatcctccggtggtttatcattgcctttataattcacagtgcttggagggcgg 444
Query: 184 tggggtagagaggtaccgagaactgcttcaccactcaagggctctcaagtggtgggttat 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tggggtagagaggtactgagaactgcttcaccactcaagggctctcaagtggtgggttat 384
Query: 244 caactgtggccacccctgggaatgccatagggagggagccgaggagtcagctcaatgggt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caactgtggccacccctgggaatgccatagggagggagccgaggagtcagctcaatgggt 324
Query: 304 aagagcatttgctctgaaagcatggtctgaattcgaacttgtagcatgtacattaaaagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagagcatttgctctgaaagcatggtctgaattcgaacttgtagcatgtacattaaaagc 264
Query: 364 tagtcagtgcccctatgacctcagcctgggggcatggaaaacaggaaagcatgaaaatgt 423
||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 263 tagacagtgcccctgtgacctcagcccgggggcatggaaaacaggaaagcatgaaaatgt 204
Query: 424 acacacacacacatacacacacacacacacacacacacacacacaccttgtgcttgaaaa 483
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 203 acacacacacaca----------cacacacacacacacacacacaccttgtgcttgaaaa 154
Query: 484 tgtatacgcagaggcagccctggggaagtataatcactgatgtgtgggacctacattcaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tgtatacgcagaggcagccctggggaagtataatcactgatgtgtgggacctacattcaa 94
Query: 544 ggcttctgatcagtgagtgtctgagatgaggctctttttcttgcttttaaaaacatactt 603
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 93 ggcttctggtcagtgagtgtctgagatgaggctctttttcttacttttaaaaacatactt 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_l08.g1 MSMg01no535_l08.g1 CHROMAT_FILE:
MSMg01no535_l08.g1 PHD_FILE: MSMg01no535_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:36 2005
(618 letters)
>mm_chr7_125227539_125228556
Length = 1018
Score = 1147 bits (593), Expect = 0.0
Identities = 614/625 (98%), Gaps = 7/625 (1%)
Strand = Plus / Plus
Query: 1 cagatccttagaggctgggtgagaggatcagatgttcaagcctagcctgggctccatagc 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cagatccttagaggctgggcgagaggatcagatgttcaagcctagcctgggctccatagc 253
Query: 61 aagacactgg-------ggtggggggcattgagagataggctaacaggtgaggttgcttc 113
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagacactggagtggggggtggggggcattgagagataggctaacaggtgaggttgcttc 313
Query: 114 aaggtcatggccccttcaagcagaagaagtttttgaagaaaacaccaggcacaggacaag 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aaggtcatggccccttcaagcagaagaagtttttgaagaaaacaccaggcacaggacaag 373
Query: 174 agtcaagagcttggggatgtgtccagggcataagacttgcctggcatgctcaaggaagaa 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agtcaagagcttggggatgtgtccagggcataagacttgcctggcatgctcaaggaagaa 433
Query: 234 catgatttccatccccaacagagctgggcaggattggtattctaagtaagtcacagggtc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 catgatttccatccccaacagagctgggcaggattggtattctaagtaagtcacagggtc 493
Query: 294 ggctccatcttccactctaaacagggcaggtagcacacctcagcactcagggaacaggca 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggctccatcttccactctaaacagggcaggtagcacacctcagcactcagggaacaggca 553
Query: 354 agagaatattgttatcgagaacaatgagccgcacgtggctgagtccggggcaggagcccc 413
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 554 agagaatattgttattgagaacaatgagccgcacgtggctgagtccggggcaggagcctc 613
Query: 414 agtggaggaggccacagtggcctaggtccagggtgccagccacagccctagttactacct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agtggaggaggccacagtggcctaggtccagggtgccagccacagccctagttactacct 673
Query: 474 catggctcccactaggaattttatttttaattttaaaaaggaatagaaactttatgggtt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 catggctcccactaggaattttatttttaattttaaaaaggaatagaaactttatgggtt 733
Query: 534 ggagagttggctctctcagtaaagtgtctgtcacacaagtgtggaggcctgactctagat 593
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ggagagatggctctctcagtaaagtgtctgtcacacaagtgtggaggcctgactctagat 793
Query: 594 ccccagaacccacataaaaagattc 618
|||||||||||||||||||||||||
Sbjct: 794 ccccagaacccacataaaaagattc 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
