BAC Information

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BAC

Clone NameMSMg01-536M13
Chromosome7 (Build37)
Map Location 6,980,283 - 6,980,760
singlet/doubletsinglet
Overlap genenone
Upstream geneNlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc
Downstream geneLOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536M13.T7 (MSMg01no536_m13.b1)MSMg01-536M13.TJ (MSMg01no536_m13.g1)
ACCAG603912AG603913
length773779
length of high quality
(start - end)		549 (70 - 618)553 (77 - 629)
definitionCHROMAT_FILE: MSMg01no536_m13.b1 PHD_FILE: MSMg01no536_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:59 2005CHROMAT_FILE: MSMg01no536_m13.g1 PHD_FILE: MSMg01no536_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATGCGC
GGAATTCCATACACTCCCTTTATTTTGGTCAAATCCATCCCCTAACCTCC
TGTTTTACTTAGCATTACTATTGCTGTAATGAAACATCATGATCAAAAGC
AACTTGAGAAGGAAATCATTTATTCAGCTTATATATATTCCAAACCACAG
ATTGTCCACTGAAGGAAGCCAAGGCAAGAGCTCAAACAGGGCAGGAACAT
GGAGGCAGGAGCTGATGTGGAGGCCATAGAGTGGTGCTGCTTACTGGATT
GCTCAGCCTGCTTTCTTTCAGAACCTCGGACCACCAGCCCATGGCTGTCC
TACCCACAACTCGTTGGGCCTCCCCCATCAATCACTAATTTAAAACAAAC
AAAAACAAACAAGTAAAAACACAAAAAACAAAAAACCCCACCCTATTGAT
TTGCCTGCCTACAGCCCAATCTTACAGAGGCATTTTCTTAATTGAGGTTC
TTTCCTCTCAAATGACTTTAGCTTGTGTCAATTGACATAAAACTAACCAG
AACATCTCCCTGCTTCAATTCTCCCCTACATCCCACATCCTCAAGTTTAT
ATTCTTTTTTTTTTGAAAGATAAGCCTCTGAGTCCAATTAGTGTGGCTGA
TATATGGGTAGGAGGCATGCCCTGGAGCACAGTCAAACTTCCATGGACCA
ACTCCCTAAAAAAGAACCTAAATCTTCCTTTCCTACAGCCGTCAACTCTC
AGTGGGTCTTCATTAAGCAAGAG

CCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCTGAATTCTCTGGCCATTTGG
GTTAATGGCAAGTGTTAGGGATCTCCAGTACATGACTGATTCTTTTAACT
TCCTACTTCTAAGGTCCAGAGAGAGCTGCTTCGCACCTACCAGTCTTGGC
AATGGAGATTTTAGTTCTTCATAACTGAAAGGCCTCCACTTGAAGTCCCG
CTGTGTATCAGAGTGAAATGACCCTGTAGTTCATGAGTCCCAAGTGTGGG
TATCTCAGTTGACAGCAAGCATAATGACATGTTGCTTCTTTCAGTTCTAA
GGCATGGGGAGAGTTTGGTAGCCAAGAGCACTTGCTGTTCTTAGTGAAGA
CTCAAGTTGAGTTCCCACCACCCACAACATTAGGTTGCTCTCAACCACCT
AAAAACCTCAAATCCAGGGGACCCTGATGCCCTCTTCTGGCATCTGAAGG
CATTGCACTGACATGTACAAGCCTACATACAGATACACAGAATTTAAAAT
AATAATACATCTTGAAATCTAGGCATGCTGGAACATGACTTTAATATCAG
CAGACAGGCAGAACACTATGAATGCTAATTGAGCCTTATTAGGCAAAATA
ATTTGAAGAAATTACTTTGTTGCCATTAAAAGGCACAACTAAATAGAAGG
ATTTATCTGGGCCAGTGATTTGGCTCAATAACGAAGAACACTTGTTTTCG
CAAAGGACCACCATTTGATACCCAGCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_m13.g1 MSMg01no536_m13.g1 CHROMAT_FILE:
MSMg01no536_m13.g1 PHD_FILE: MSMg01no536_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:59 2005
         (553 letters)



>mm_chr7_6980283_6981235
          Length = 953

 Score =  886 bits (458), Expect = 0.0
 Identities = 473/478 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctgaattctctggccatttgggttaatggcaagtgttagggatctccagtacatgac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 478 accctgaattctctggccatttgggttaatggcaagtgttagggatctccagcacatgac 419

                                                                       
Query: 61  tgattcttttaacttcctacttctaaggtccagagagagctgcttcgcacctaccagtct 120
           |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 418 tgattcttttaacttcctacttctgaggtccagagagaactgcttcgcacctaccagtct 359

                                                                       
Query: 121 tggcaatggagattttagttcttcataactgaaaggcctccacttgaagtcccgctgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 358 tggcaatggagattttagttcttcataactgaaaggcctccacttgaagtcccactgtgt 299

                                                                       
Query: 181 atcagagtgaaatgaccctgtagttcatgagtcccaagtgtgggtatctcagttgacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atcagagtgaaatgaccctgtagttcatgagtcccaagtgtgggtatctcagttgacagc 239

                                                                       
Query: 241 aagcataatgacatgttgcttctttcagttctaaggcatggggagagtttggtagccaag 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 238 aagcataatgacatgttgcttctttcagttctgaggcatggggagagtttggtagccaag 179

                                                                       
Query: 301 agcacttgctgttcttagtgaagactcaagttgagttcccaccacccacaacattaggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 agcacttgctgttcttagtgaagactcaagttgagttcccaccacccacaacattaggtt 119

                                                                       
Query: 361 gctctcaaccacctaaaaacctcaaatccaggggaccctgatgccctcttctggcatctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gctctcaaccacctaaaaacctcaaatccaggggaccctgatgccctcttctggcatctg 59

                                                                     
Query: 421 aaggcattgcactgacatgtacaagcctacatacagatacacagaatttaaaataata 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  aaggcattgcactgacatgtacaagcctacatacagatacacagaatttaaaataata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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