Query= MSMg01no537_e18.b1 MSMg01no537_e18.b1 CHROMAT_FILE:
MSMg01no537_e18.b1 PHD_FILE: MSMg01no537_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:38 2005
(556 letters)
>mm_chr7_36482521_36483476
Length = 956
Score = 1044 bits (540), Expect = 0.0
Identities = 552/556 (99%)
Strand = Plus / Plus
Query: 1 tagggaaattcagttttcttcaattaatgtttacttaacactaatcctggaccaggtcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tagggaaattcagttttcttcaattaatgtttacttaacactaatcctggaccgggtcta 260
Query: 61 tcttcctagcctacatttagagtctaaattatagctaaagtctaaattttagaccgtatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcctagcctacatttagagtctaaattatagctaaagtctaaattttagaccgtatc 320
Query: 121 accattgctaaaaggaatacatatgaatgaaaggccggtcttcagtccccttggatcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accattgctaaaaggaatacatatgaatgaaaggccggtcttcagtccccttggatcctc 380
Query: 181 tcaatgttataaaccacgccaattagctcataacgactatcttctgcatgacataggttt 240
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 381 tcaatgttataaaccacgccaattagcccataacgactgtcttctgcatgacataggttt 440
Query: 241 agaatacactgaaaaaggagcctggtttccatgtatggtggagcaggaggtagaggcagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatacactgaaaaaggagcctggtttccatgtatggtggagcaggaggtagaggcagc 500
Query: 301 tccagtttcatttagtcttgaactgccaagcttcaacaggtaaattacagctgaacaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccagtttcatttagtcttgaactgccaagcttcaacaggtaaattacagctgaacaagt 560
Query: 361 gggcaaacttcaaaagggagaacttcaaaaatttataaaattatgaagataggagaaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggcaaacttcaaaagggagaacttcaaaaatttataaaattatgaagataggagaaagg 620
Query: 421 ctcattaaatagaaaaggtttgggcagggggctagagtggttaagagcactgactgcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcattaaatagaaaaggtttgggcagggggctagagtggttaagagcactgactgcttt 680
Query: 481 tccaggggactctggttcaagtcccagcaaccacataggagtacacatctgtaactacag 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 tccaggggactctggttcaagtcccagcaaccacatgggagtacacatctgtaactacag 740
Query: 541 ttctgggatctgatgc 556
||||||||||||||||
Sbjct: 741 ttctgggatctgatgc 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_e18.g1 MSMg01no537_e18.g1 CHROMAT_FILE:
MSMg01no537_e18.g1 PHD_FILE: MSMg01no537_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:38 2005
(593 letters)
>mm_chr7_36683491_36684483
Length = 993
Score = 890 bits (460), Expect = 0.0
Identities = 512/536 (95%), Gaps = 13/536 (2%)
Strand = Plus / Minus
Query: 60 aatgaaataatgcttcatacaacagtgaaagttgctaggttatccatcccaaaccaatta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 aatgaaataatgcttcatacaacagtgaaagttgctaggttatccatcccaaaccaatta 934
Query: 120 ccggtgcgatttcaagtcctttgttttccagtggccttttattttattttgtttttaccc 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 ccggtgagatttcaagtcctttgttttccagtggccttttattttattttgtttttaccc 874
Query: 180 ttccacatttagcaatgtcctacatctaccacttgaggattaggaagtcagtg--caatt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 873 ttccacatttagcaatgtcctacatctaccacttgaggattaggaagtcagtggt---tt 817
Query: 238 ggggtttcctagaaccatcatactgaccacatgaccacaggaccacatgaccactgcacc 297
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 816 ggggtttcctcgaaccatcatactgaccacat--------gaccacatgaccactgcacc 765
Query: 298 atgtgatcgtcttctttcatctgtttgggcatcagatggtcttggaacacatcccagagc 357
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 atgtgatcatcttctttcatctgtttgggcatcagatggtcttggaacacatcccagagc 705
Query: 358 caggcatgttctaaaagtctggtgatcccctgttgaggaggttggaatgagttagttagg 417
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 704 caggcatgttctaaaagcctggtgatcccctgttgaggaagttggaatgagttagttaag 645
Query: 418 cagctcggtgggatggtgttctgatcccttctgtgggagcagacactaggggccggagaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 644 cagctcggtgggatggtgttctgatcccttctgtgggagcagacactaggggcaggagaa 585
Query: 478 gagagctagccctaagagggagttcagagatggctgcgctgaagagatgaaggtaagaag 537
|||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 584 gagagctagccctaggagggagttcagagatggctgctctgcagagatgaaggtaagaag 525
Query: 538 acctgagctgctgggcgggatggtgtacaccctgtaagcccagcactcaaaacgct 593
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 524 acctgagctgctgggcgggatggtgtacaccctgtaagcccagcactccaaacgct 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
