BAC Information

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BAC

Clone NameMSMg01-538L10
Chromosome7 (Build37)
Map Location 90,769,428 - 90,959,586
singlet/doubletdoublet
Overlap geneTmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik
Upstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160
Downstream geneMesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538L10.T7 (MSMg01no538_l10.b1)MSMg01-538L10.TJ (MSMg01no538_l10.g1)
ACCAG605377AG605378
length735737
length of high quality
(start - end)		572 (38 - 609)605 (67 - 671)
definitionCHROMAT_FILE: MSMg01no538_l10.b1 PHD_FILE: MSMg01no538_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:26 2005CHROMAT_FILE: MSMg01no538_l10.g1 PHD_FILE: MSMg01no538_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,959,019 - 90,959,586)(90,769,428 - 90,770,032)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGCC
CTCTGCATTTGGAAAGAGCATTAAGAGTTGAGTTTCTTACAACACAGGAA
GCATTTGCTTGAGGCTAAGGATTCCCGCGCTTGTGTTGAACAAAGTTAAG
AGAGAGGCAGGCTAGCAGGTTCCCTTTTTTGGAACAGGTAACCAGGCTAC
AGAGCTGTTAAGTAACAGAAAATCAGGTCTCCCCTGGCAATCTTGTACTT
AACTTTGTGACTTTAAGGTTTGAGACAGGGCCTAGGGACTGACGCTTCCT
CTTGGAAGTAGGAAGCAAAGTTTGGGATTTCTTTTTTTTTTCTTTCTTTT
GCTGAATGGGTGGATGAGGGTGTCAGAGAGGAGGAAGGGAGGATCCCCCC
AGTACCATTTTAGGCTGTTTCCCTTAGCAACCCCACGGATGGATTTCCGT
GCAGCCTCTTTCCCTTCCCGGTTCCTTTTCTGTTTTCCAAGGGGAACAAT
GAGGGAGTGAGGGATAAGCGGTGATGTTTATCTTTCCAGCTCAGACCTTT
CAACTGCTGGAATCCCCCAGGGCTGGGGAAGGGTGGGTGGAGTCACTTCC
CACTGTTGCCAAGGGTGGGAGACCAGTCCCTCCTGCTGGGGCAGGGGGTG
CGTGGCTTCCTCATAAATAGGAAATGTATCTCCCAAATTGGAGTCATCAA
GGACTTATCTCCAGCCGCAGACACCAGAGAGGAGC

GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAA
GGCATGAACTACTACGCCCGGCGCAAAGGTTTATTAAGAAACTTAAATGA
GCAACTGACAGGATTACAATGTATAAGGTAAAAACATAGATGTCAGCGAC
ACAGAAGGTCAGGATACTGTCACTGAAAACAGAATGAGCAGTCTTGTTTT
AGACACTCAGGCCTTGTCTAGGGAAGGAATAAAACTCTATGCAAGGTCAC
ACACACTCAGGCCTTAACCCTGGTTCCTTAGTGCACATGGAGTATCTATG
GATGCGAGCACTATGAGCCCCTATGTCCCAGCCGTCATAGCCAGTGTTGA
GAGTTCTGGGATTCCTGCTTCTAGGCTAGTGGGAGGCTCCACTATACCCT
GGGTGATGGGTTCCTTCCGCTCACTGGGTCCCAGGGCTTCCCTATCTTTT
TATCTGGCCTCATTCCATTCTTCGAATGGTAAATGGTCTCCACCTCACAT
GCAGACTGATAAGTTATTGGCAAGACCCTCAATGTGTTATGTATATGGGC
CAGATGCTTCAATTTCATCTTCCAGAAAGCAGGAGAACCCAACTTCCTTT
GCTCTTCAAACAGCACCCAGAGGAATGAGGAGACAGAATCATACCCATCA
TTTGTAGTACAGTGGACACCCTAGAGATAGATATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_l10.b1 MSMg01no538_l10.b1 CHROMAT_FILE:
MSMg01no538_l10.b1 PHD_FILE: MSMg01no538_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:26 2005
         (572 letters)



>mm_chr7_90958815_90959786
          Length = 972

 Score = 1098 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgccctctgcatttggaaagagcattaagagttgagtttcttacaacacaggaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gaattcgccctctgcatttggaaagagcattaagagttgagtttcttacaacacaggaag 713

                                                                       
Query: 65  catttgcttgaggctaaggattcccgcgcttgtgttgaacaaagttaagagagaggcagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 catttgcttgaggctaaggattcccgcgcttgtgttgaacaaagttaagagagaggcagg 653

                                                                       
Query: 125 ctagcaggttcccttttttggaacaggtaaccaggctacagagctgttaagtaacagaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ctagcaggttcccttttttggaacaggtaaccaggctacagagctgttaagtaacagaaa 593

                                                                       
Query: 185 atcaggtctcccctggcaatcttgtacttaactttgtgactttaaggtttgagacagggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atcaggtctcccctggcaatcttgtacttaactttgtgactttaaggtttgagacagggc 533

                                                                       
Query: 245 ctagggactgacgcttcctcttggaagtaggaagcaaagtttgggatttctttttttttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctagggactgacgcttcctcttggaagtaggaagcaaagtttgggatttctttttttttt 473

                                                                       
Query: 305 ctttcttttgctgaatgggtggatgagggtgtcagagaggaggaagggaggatcccccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctttcttttgctgaatgggtggatgagggtgtcagagaggaggaagggaggatcccccca 413

                                                                       
Query: 365 gtaccattttaggctgtttcccttagcaaccccacggatggatttccgtgcagcctcttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtaccattttaggctgtttcccttagcaaccccacggatggatttccgtgcagcctcttt 353

                                                                       
Query: 425 cccttcccggttccttttctgttttccaaggggaacaatgagggagtgagggataagcgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cccttcccggttccttttctgttttccaaggggaacaatgagggagtgagggataagcgg 293

                                                                       
Query: 485 tgatgtttatctttccagctcagacctttcaactgctggaatcccccagggctggggaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgatgtttatctttccagctcagacctttcaactgctggaatcccccagggctggggaag 233

                                       
Query: 545 ggtgggtggagtcacttcccactgttgc 572
           ||||||||||||||||||||||||||||
Sbjct: 232 ggtgggtggagtcacttcccactgttgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_l10.g1 MSMg01no538_l10.g1 CHROMAT_FILE:
MSMg01no538_l10.g1 PHD_FILE: MSMg01no538_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:26 2005
         (605 letters)



>mm_chr7_90769228_90770232
          Length = 1005

 Score = 1123 bits (581), Expect = 0.0
 Identities = 599/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctgcctctgcctcccgagtgctgggattaaaggcatgaactactacgcccggcgcaa 60
           ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 cacctgcttctgcctcccgagtgctgggattaaaggcgtgaactactacgcccggcgcaa 260

                                                                       
Query: 61  aggtttattaagaaacttaaatgagcaactgacaggattacaatgtataaggtaaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtttattaagaaacttaaatgagcaactgacaggattacaatgtataaggtaaaaaca 320

                                                                       
Query: 121 tagatgtcagcgacacagaaggtcaggatactgtcactgaaaacagaatgagcagtcttg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatgtcagtgacacagaaggtcaggatactgtcactgaaaacagaatgagcagtcttg 380

                                                                       
Query: 181 ttttagacactcaggccttgtctagggaaggaataaaactctatgcaaggtcacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttagacactcaggccttgtctagggaaggaataaaactctatgcaaggtcacacacac 440

                                                                       
Query: 241 tcaggccttaaccctggttccttagtgcacatggagtatctatggatgcgagcactatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaggccttaaccctggttccttagtgcacatggagtatctatggatgcgagcactatga 500

                                                                       
Query: 301 gcccctatgtcccagccgtcatagccagtgttgagagttctgggattcctgcttctaggc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 gcccctatgtcccagccgtcatagccagtgttgagagttctgggattcctgcttctcggc 560

                                                                       
Query: 361 tagtgggaggctccactataccctgggtgatgggttccttccgctcactgggtcccaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtgggaggctccactataccctgggtgatgggttccttccgctcactgggtcccaggg 620

                                                                       
Query: 421 cttccctatctttttatctggcctcattccattcttcgaatggtaaatggtctccacctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttccctatctttttatctggcctcattccattcttcgaatggtaaatggtctccacctc 680

                                                                       
Query: 481 acatgcagactgataagttattggcaagaccctcaatgtgttatgtatatgggccagatg 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacgcagactgataagttattggcaagaccctcaatgtgttatgtatatgggccagatg 740

                                                                       
Query: 541 cttcaatttcatcttccagaaagcaggagaacccaacttcctttgctcttcaaacagcac 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 cttcaatttcatcttccagaaagcaggagaacccaacttcctttactcttcaaacagcac 800

                
Query: 601 ccaga 605
           |||||
Sbjct: 801 ccaga 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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