Query= MSMg01no539_a16.b1 MSMg01no539_a16.b1 CHROMAT_FILE:
MSMg01no539_a16.b1 PHD_FILE: MSMg01no539_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:50 2005
(603 letters)
>mm_chr7_132304490_132305493
Length = 1004
Score = 1129 bits (584), Expect = 0.0
Identities = 596/600 (99%), Gaps = 1/600 (0%)
Strand = Plus / Plus
Query: 5 gaattctggg-aattctcagaggtgagggagatccttactggaacactgaggagaggggt 63
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggaaatagtcagaggtgagggagatccttactggaacactgaggagaggggt 264
Query: 64 gtaagacgaggagagtaaaccagctaacttgagttagaataaaagggataataaattaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaagacgaggagagtaaaccagctaacttgagttagaataaaagggataataaattaag 324
Query: 124 agctagttggaaaacaaaccaaagcttatgatcttggcatttattaataaataattagtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agctagttggaaaacaaaccaaagcttatgatcttggcatttattaataaataattagtc 384
Query: 184 tcagggtcattatgagaactgactgattaggaagaaaaactagattttacaggagagtgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagggtcattatgagaactgactgattaggaagaaaaactagattttacaggagagtgt 444
Query: 244 acccacccattgtgcatgagagaaaccccacgggagcctccaacagacaaccatccatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acccacccattgtgcatgagagaaaccccacgggagcctccaacagacaaccatccatgt 504
Query: 304 agctttaaggaaagaaaacagaaacgtcttcttggagtagtgtgacccaaactgggtcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctttaaggaaagaaaacagaaacgtcttcttggagtagtgtgacccaaactgggtcca 564
Query: 364 aatttgaattttctacttctcttcctgtgtctccccactgtctctagtctgtggttattg 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatttaaattttctacttctcttcctgtgtctccccactgtctctagtctgtggttattg 624
Query: 424 gcctatttgtgttgaccgctgtgtgtgattgatctgtctgcccctgttatctgcctctga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcctatttgtgttgaccgctgtgtgtgattgatctgtctgcccctgttatctgcctctga 684
Query: 484 tgcctgtgtgtgttgtgcctgtccccgacaaagggctttgctctgtgtttatttgaacag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcctgtgtgtgttgtgcctgtccccgacaaagggctttgctctgtgtttatttgaacag 744
Query: 544 cacaggaaacatgacatgggaaagaactaaggagtctcctgcagaattctttaacagagc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacaggaaacatgacatgggaaagaactaaggagtctcctgcagaattctttaacagagc 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_a16.g1 MSMg01no539_a16.g1 CHROMAT_FILE:
MSMg01no539_a16.g1 PHD_FILE: MSMg01no539_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:51 2005
(639 letters)
>mm_chr7_132510813_132511851
Length = 1039
Score = 864 bits (447), Expect = 0.0
Identities = 519/565 (91%), Gaps = 38/565 (6%)
Strand = Plus / Minus
Query: 106 atgctggctgggtctccctttctcttgataattctttggtcagaagagatggctgagtgg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 atgctggctgggtctccctttctcttgataattctttggtcagaagagatggctgagtgg 980
Query: 166 ataagagcactttctgtgtgagcttgtggatttggatggggatgtggccataaggagcct 225
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 979 ataagagcactttctgtgtgagcttgtggatttggatggggatgtggccatagggagcct 920
Query: 226 gtaaccctgtgatataaaagactggagacagaagtatagctggggttggatgaccacgac 285
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 919 gtaacgctgtgatataaaagactggagacagaagtatagctggggttggatgaccatgac 860
Query: 286 cctatttcaggttcagtgagagaccctgtctctaaggtgcagttataggaaacttggtat 345
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 cctatgtcaggttcagtgagagaccctgtctctaaggtgcagttataggaaacttggtat 800
Query: 346 cttcttttggcctctctttcacatcatgtacacactatatacatatatatgtatactcac 405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 799 cttcttttggcctctctttcacatcatgtacacactatatacatatatatgtatacacac 740
Query: 406 acatatatacacatatagtctttattgctattataggttgcatgtagtattgggtttcag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acatatatacacatatagtctttattgctattataggttgcatgtagtattgggtttcag 680
Query: 466 ttcaagtcagtcatgtttactgccttactctcatcccctcttcttactgctctactctgt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttcaagtcagtcatgtttactgccttactctcatcccctcttcttactgctctactctgt 620
Query: 526 tagtctctttccttccctcagctcccctcct----------------------------a 557
||||||||||||||||||||||||||||||| |
Sbjct: 619 tagtctctttccttccctcagctcccctcctacacacacacacacacacacacacacaca 560
Query: 558 cacacacacacacacacacacattcatacagacatg----tatatatatatatata---t 610
|||||||||||||||||||||||||||||||||||| |||||||||||| | | |
Sbjct: 559 cacacacacacacacacacacattcatacagacatgtatatatatatatatacacacaat 500
Query: 611 gtatatatatatacacacaatatat 635
||||||| ||||||||| |||||
Sbjct: 499 --atatatacatacacaca-tatat 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
