BAC Information

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BAC

Clone NameMSMg01-540A08
Chromosome7 (Build37)
Map Location 69,121,997 - 69,122,499
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540A08.T7 (MSMg01no540_a08.b1)MSMg01-540A08.TJ (MSMg01no540_a08.g1)
ACCAG606372AG606373
length664728
length of high quality
(start - end)		197 (52 - 248)595 (79 - 673)
definitionCHROMAT_FILE: MSMg01no540_a08.b1 PHD_FILE: MSMg01no540_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:10 2005CHROMAT_FILE: MSMg01no540_a08.g1 PHD_FILE: MSMg01no540_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGAGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGAACTCTTCCGCTGGGGAACAGGGTACCTGTAAGTATA
GCTTTACAAGGTAACTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAG
TCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTACGTCTGGCCTTG
AACTTTCTAACGAAATTCAAGACAGTNNCTATCAGAAAAGTAAAGGTGGG
GNAAAATAGNNNCTTTTACAAGGTATGTTTGGCCTTGAATTTCTCTAGTG
GTAGGAGCCTTTTTGGTTCCTTTTCCCCGGGGTGTTATAAAGGGGGGGAG
NGGGGGGGGGGGGGGAAAAAANTTTTTTTGGGGAAAAANNAGGGGGGGTC
CTTTTTTCTTCAAAACAANNGGGGGGGGGGGGGGGGGGGGCACCCNCAAA
TAAAGNGTGGAGTGGTCGTTAACTTNNNTCATTAGAAGNACACCCTTCTT
GTGGGGNNNNCGGCCCTCNTTGGTAGGGGGNNNNNNNNAGGNNAGGAGNN
NNNNNGGGCGAGANNNNAGGAAGGNNNNNNNNNTTNTNCGNTNNNNNNNN
TTNNNNTTGGTGTTNNTGGGGGNCTCCCAAAGGGATNCGGGGGGGGGAGT
GGGGGCCCTAAAAA

TTTCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCAT
TTTTAAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTT
ATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCC
TTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGTTGTCTTTTGCC
TTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCT
TACAGCACAAGCCATTGCTGTTCTGTTCAGGAATAGCATCTAAATATATT
AAATATGTTTATTTATTTTTGACCAGAATTATTAAAGCAGATATCAATGT
GAATATTTTGAATTGGTTTGTTTTATTTTTCTTGTCCATGGACCATTCTA
GAATACTAGTACATATTTATACATAGAATAGAGGATACCACTGTTAAATA
TTTTTTTCAAAGTTTGTTCCACATTATCAATATCAACAATTTACAAGGTC
AATTTCTTAATTTTCAAAGGATTACACTGGAGTAAAAATTCTATAATATG
TTTTGAAAAATTAAATTTGCAGAACACAAACAATGAATAAACTAATAAGA
TAATTTTCAACAGAAGTAAGGTCTGTGAGGAGGAACATAGAAGGCTTATG
TGACAACCAATACCCACACCCAAACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_a08.g1 MSMg01no540_a08.g1 CHROMAT_FILE:
MSMg01no540_a08.g1 PHD_FILE: MSMg01no540_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:10 2005
         (595 letters)



>mm_chr7_69121505_69122499
          Length = 995

 Score =  957 bits (495), Expect = 0.0
 Identities = 501/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 93  ccctatctgatttaggataggtaaagatcctttcccaatctgttggtggtctttttgtct 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 ccctatctgatttaggataggtaaagatcctttcccaatctgttggtggtctttttgtct 936

                                                                       
Query: 153 tattgacgttgtcttttgccttgcagaaactttggagtttcattaggtcccatttgtcaa 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 tattgacgttgtcttttgccttgcagaaactttggagtttcattaggtcccatttgtcaa 876

                                                                       
Query: 213 ttctcgatcttacagcacaagccattgctgttctgttcaggaatagcatctaaatatatt 272
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 875 ttctcgatcttatagcacaagccattggtgttctgttcaggaatagcatctaaatatatt 816

                                                                       
Query: 273 aaatatgtttatttatttttgaccagaattattaaagcagatatcaatgtgaatattttg 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aaatatgtttatttatttttgaccagaattattaaagcagatatcaatgtgaatattttg 756

                                                                       
Query: 333 aattggtttgttttatttttcttgtccatggaccattctagaatactagtacatatttat 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aattggtttgttttatttttcttgtccatggaccattctagaatactagtacatatttat 696

                                                                       
Query: 393 acatagaatagaggataccactgttaaatatttttttcaaagtttgttccacattatcaa 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 acatagaatagaggataccactgttaaatatttttttcaaagtttgttccacattatcaa 636

                                                                       
Query: 453 tatcaacaatttacaaggtcaatttcttaattttcaaaggattacactggagtaaaaatt 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tatcaacaatttacaaggtcaatttcttaattttcaaaggattacactggagtaaaaatt 576

                                                                       
Query: 513 ctataatatgttttgaaaaattaaatttgcagaacacaaacaatgaataaactaataaga 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctataatatgttttgaaaaattaaatttgcagaacacaaacaatgaataaactaataaga 516

                                  
Query: 573 taattttcaacagaagtaaggtc 595
           |||||||||||||||||||||||
Sbjct: 515 taattttcaacagaagtaaggtc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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