Query= MSMg01no540_h07.b1 MSMg01no540_h07.b1 CHROMAT_FILE:
MSMg01no540_h07.b1 PHD_FILE: MSMg01no540_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:44 2005
(212 letters)
>mm_chr7_142949417_142950028
Length = 612
Score = 410 bits (212), Expect = e-119
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 1 atgcctagctctcctctggtcagggataaaccagtgtccttctcctctctttacccaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atgcctagctctcctctggtcagggataaaccagtgtccttctcctctctttacccaggg 353
Query: 61 gaaatcaccttttctttgaagaggaatcacacaaagaccttgaagaggccagaaagcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaaatcaccttttctttgaagaggaatcacacaaagaccttgaagaggccagaaagcttg 293
Query: 121 caggtggtggctctgccttctttagtaggttacctggctactttacatactgcctaccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 caggtggtggctctgccttctttagtaggttacctggctactttacatactgcctaccct 233
Query: 181 cgggttcaaaatgagcaagaaataaatccagc 212
||||||||||||||||||||||||||||||||
Sbjct: 232 cgggttcaaaatgagcaagaaataaatccagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space: 122409
Effective search space used: 122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no540_h07.g1 MSMg01no540_h07.g1 CHROMAT_FILE:
MSMg01no540_h07.g1 PHD_FILE: MSMg01no540_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:44 2005
(559 letters)
>mm_chr7_142810885_142811842
Length = 958
Score = 955 bits (494), Expect = 0.0
Identities = 546/568 (96%), Gaps = 15/568 (2%)
Strand = Plus / Plus
Query: 1 accttgacctgggcatggggccctcttgaggtctaca--tctctctatgtttggtgagca 58
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 201 accttgacctgggcatggggccctcttgaggtc--catgtctctctatgtttggtgagca 258
Query: 59 gaaggcttctaaccaaggatactgctcagtaggatggccttgtatttttatcttatgcca 118
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 259 gaaggcttctaaccaaggatactgctcactaggatggccttgta-ttttatcttatgcca 317
Query: 119 tcttttattaattttttaaaaaaatcagtgtgatgctgtaatggttattcctggttatca 178
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 318 tcttttattaatttttt-taaaaatcagtgtgatgctgtaatggttattcctggttgtca 376
Query: 179 atttaactacgtctggaataaactataatacagaaattgagggcacacctgtgatccaga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atttaactacgtctggaataaactataatacagaaattgagggcacacctgtgatccaga 436
Query: 239 ccttgaggctggaagacgcaggtttctgacctggatctcgacatgaggtgacacatactt 298
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 437 ccttgaggctggaagacgcaggtttctgacctgtatcttgacatgaggtgacacatactt 496
Query: 299 ttgatccatatctcgaggtatggtggccatgaaaagttagacccaggcaaggtactacat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttgatccatatctcgaggtatggtggccatgaaaagttagacccaggcaaggtactacat 556
Query: 359 acctttaaacccaacagactgaggcaagcagatctctgagttcaaagtcagcctgggaca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acctttaaacccaacagactgaggcaagcagatctctgagttcaaagtcagcctgggaca 616
Query: 419 gagcaagttccaaatcc-ag-gcatggtggtccacacctttaatctgagccat-----ct 471
||||||||||||||||| || | |||||||||| |||||||||||||||||| ||
Sbjct: 617 gagcaagttccaaatcctagtg--tggtggtccatacctttaatctgagccatacctgct 674
Query: 472 gctggaggcttgcataaggacaatcgaagaaggaaggctctctctctcttcttcacctgc 531
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gctggaggcttacataaggacaatcgaagaaggaaggctctctctctcttcttcacctgc 734
Query: 532 ttgtgcttacttgccagcatatctgtta 559
||||||||||||||||||||||||||||
Sbjct: 735 ttgtgcttacttgccagcatatctgtta 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space: 520452
Effective search space used: 520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
