BAC Information

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BAC

Clone NameMSMg01-541B13
Chromosome7 (Build37)
Map Location 135,174,375 - 135,299,068
singlet/doubletdoublet
Overlap geneEG668675, Itgam, Itgax
Upstream geneKif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010
Downstream geneItgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541B13.T7 (MSMg01no541_b13.b1)MSMg01-541B13.TJ (MSMg01no541_b13.g1)
ACCAG607192AG607193
length760765
length of high quality
(start - end)		660 (49 - 708)677 (79 - 755)
definitionCHROMAT_FILE: MSMg01no541_b13.b1 PHD_FILE: MSMg01no541_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:37 2005CHROMAT_FILE: MSMg01no541_b13.g1 PHD_FILE: MSMg01no541_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(135,174,375 - 135,175,024)(135,298,392 - 135,299,068)
sequence
NNAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTATGTGGCTTTGGCTGGCCTAGAACTCAGCTCAGGCTGGC
CTCAAACTCACAGAGACCTGCCTGACTCTGCTTTTGAATGCTGGGATTAA
AGGTGTGTGCCACTATGCCCGGCCACATTTTCTTCTTTATTTTTAAAGAT
TTACTTGTATTATTTTAATGTGGGCATGCCTCTGTGTGTGTGTGCAGGTA
TCCACAGGCCAGAGGAGTTGGATCCCCTGGAGCTGGACTCACCCTATGTT
GGTGCTGGGAACCAAACTCAGGTCCTTTGGAAGGGCTGTATGTGCTCCTA
ACTGTTGAGCTGTTTGTCATGTTTGCAGCGCCATAGAGGTCAGAGGAAGC
ATCAGATCCCCTGACACTGGCATTCCAGATGGTGATGAGCAGCCGTGTGA
GTCCTGGGAACTGATCCCTGATCCCATGGAAGGTCAGGGAACTGCTCTTA
AGTGCCAAGCCATCTCATCCCTTCAGCCACAGAAGTTGCTTTCTTAACTA
ATATCCCTGGAATCATTTTGTGAAGTCACCTCCCTTTTCAAGGTACCCAC
TCCAACCTTCTTTTGTTTCTTTTTGGCAGTGTTCGGAATAGAACCAGGGC
CTCACACTTGGGAGTCTTCCTCTCTTAAGCTCTTTGCTTTCTTCGCTTTT
TTTTTTTTTTTTGAGACAGGATTTCATGTCATTCAGCTTAACCTCTAAAC
AATTGTGGGC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAAAAACAGTCCAAGGACG
TTCTGGAAGGGCTTAAAGTCAGACTCAGAATTAAACAGAAAGTGTTCAAA
GCCAAACAGCAAAATGGAAGCTTTCATTAGCTGTTCAATTCTATCAAATG
TGAACAGAAAGTTTGGATCGCGGCTATCTCAACAGCACTTATTTCAAAGC
TAACTCCAACCTTTCATCATGGAGCTACAGGCATGGCACTGAGTGGCACC
TCTACTCCAATCCTCCGAGCAGAGCTGGGATCTAAAGACGATAACCCTCT
TAAGAGCAGAGACAAAGTAAATGAGATAAGACTGAGCCTGAGAAGCCCCG
GGCTGGGAGCGGAGCACGCGCGGAGGCCACAGCCCCGGAGGAAAAGAACT
CTCTCAGCAGCCAGCTGCCCTGAAGGGGATTCATAGGTGCCGGCTGGTTC
CCCGGGCAACAGCCTAAAGCTCTGGAGTAATGATCACACCCTAGCCCTGA
CACCTGCCCACTGAAACCTGGACTCTGTTCTTGTCAATACTTTGTCTGCA
AGTTATGGCTTAGTCTTGGACACCAAACTGTACTTAAGCCAATTAGGAAC
AAAGCCAAATTGCATTTTCCTTAGGTCTAGTTAGATGAGAATAACATCTC
ATGTAGTGACTTCATCATGCAATCTTTAACAAAAACTCGTAAGTGGCATT
GATTATTCCCCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_b13.b1 MSMg01no541_b13.b1 CHROMAT_FILE:
MSMg01no541_b13.b1 PHD_FILE: MSMg01no541_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:37 2005
         (660 letters)



>mm_chr7_135174172_135175231
          Length = 1060

 Score = 1234 bits (638), Expect = 0.0
 Identities = 647/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatgtggctttggctggcctagaactcagctcaggctggcctcaaactcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactatgtggctttggctggcctagaactcagctcaggctggcctcaaactcac 263

                                                                       
Query: 64  agagacctgcctgactctgcttttgaatgctgggattaaaggtgtgtgccactatgcccg 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 agagacctgcctgactctgcttttgaatgctgggattaaaggtgtgtgccaccatgcccg 323

                                                                       
Query: 124 gccacattttcttctttatttttaaagatttacttgtattattttaatgtgggcatgcct 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccaaattttcttctttatttttaaagatttacttgtattattttaatgtgggcatgcct 383

                                                                       
Query: 184 ctgtgtgtgtgtgcaggtatccacaggccagaggagttggatcccctggagctggactca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtgtgtgtgtgcaggtatccacaggccagaggagttggatcccctggagctggactca 443

                                                                       
Query: 244 ccctatgttggtgctgggaaccaaactcaggtcctttggaagggctgtatgtgctcctaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccctatgttggtgctgggaaccaaactcaggtcctttggaagggctgtatgtgctcctaa 503

                                                                       
Query: 304 ctgttgagctgtttgtcatgtttgcagcgccatagaggtcagaggaagcatcagatcccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgttgagctgtttgtcatgtttgcagcgccatagaggtcagaggaagcatcagatcccc 563

                                                                       
Query: 364 tgacactggcattccagatggtgatgagcagccgtgtgagtcctgggaactgatccctga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgacactggcattccagatggtgatgagcagccgtgtgagtcctgggaactgatccctga 623

                                                                       
Query: 424 tcccatggaaggtcagggaactgctcttaagtgccaagccatctcatcccttcagccaca 483
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcccatggaaggtcagggaactgttcttaagtgccaagccatctcatcccttcagccaca 683

                                                                       
Query: 484 gaagttgctttcttaactaatatccctggaatcattttgtgaagtcacctcccttttcaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaagttgctttcttaactaatatccctggaatcattttgtgaagtcacctcccttttcaa 743

                                                                       
Query: 544 ggtacccactccaaccttcttttgtttctttttggcagtgttcggaatagaaccagggcc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggtacccactccaaccttcttttgtttctttttggcagtgttcggaatagaaccagggcc 803

                                                             
Query: 604 tcacacttgggagtcttcctctcttaagctctttgctttcttcgcttttt 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcacacttgggagtcttcctctcttaagctctttgctttcttcgcttttt 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no541_b13.g1 MSMg01no541_b13.g1 CHROMAT_FILE:
MSMg01no541_b13.g1 PHD_FILE: MSMg01no541_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:37 2005
         (677 letters)



>mm_chr7_135298192_135299268
          Length = 1077

 Score = 1263 bits (653), Expect = 0.0
 Identities = 671/677 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaaaaacagtccaaggacgttctggaagggcttaaagtcagactcagaattaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 aataaaaaacagtccaaggacgttctggaagggcttaaagtcagactcagaattaaacag 818

                                                                       
Query: 61  aaagtgttcaaagccaaacagcaaaatggaagctttcattagctgttcaattctatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aaagtgttcaaagccaaacagcaaaatggaagctttcattagctgttcaattctatcaaa 758

                                                                       
Query: 121 tgtgaacagaaagtttggatcgcggctatctcaacagcacttatttcaaagctaactcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgtgaacagaaagtttggatcgcggctatctcaacagcacttatttcaaagctaactcca 698

                                                                       
Query: 181 acctttcatcatggagctacaggcatggcactgagtggcacctctactccaatcctccga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 acctttcatcatggagctacaggcatggcactgagtggcacctctactccaatcctccga 638

                                                                       
Query: 241 gcagagctgggatctaaagacgataaccctcttaagagcagagacaaagtaaatgagata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gcagagctgggatctaaagacgataaccctcttaagagcagagacaaagtaaatgagata 578

                                                                       
Query: 301 agactgagcctgagaagccccgggctgggagcggagcacgcgcggaggccacagccccgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agactgagcctgagaagccccgggctgggagcggagcacgcgcggaggccacagccccgg 518

                                                                       
Query: 361 aggaaaagaactctctcagcagccagctgccctgaaggggattcataggtgccggctggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aggaaaagaactctctcagcagccagctgccctgaaggggattcataggtgccggctggt 458

                                                                       
Query: 421 tccccgggcaacagcctaaagctctggagtaatgatcacaccctagccctgacacctgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tccccgggcaacagcctaaagctctggagtaatgatcacaccctagccctgacacctgcc 398

                                                                       
Query: 481 cactgaaacctggactctgttcttgtcaatactttgtctgcaagttatggcttagtcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 397 cactgaaacctggactctgttcttgtcaatactttgtctgcaagttatggcttggtctta 338

                                                                       
Query: 541 gacaccaaactgtacttaagccaattaggaacaaagccaaattgcattttccttaggtct 600
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gacacaaaactatacttaagccaattaggaacaaagccaaattgcattttccttaggtct 278

                                                                       
Query: 601 agttagatgagaataacatctcatgtagtgacttcatcatgcaatctttaacaaaaactc 660
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 277 agttagatgagaataaaatctcatgtagtgacttcatcatacaatctttaacaaaaactc 218

                            
Query: 661 gtaagtggcattgatta 677
           |||||||||||||||||
Sbjct: 217 gtaagtggcattgatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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