Query= MSMg01no541_e24.b1 MSMg01no541_e24.b1 CHROMAT_FILE:
MSMg01no541_e24.b1 PHD_FILE: MSMg01no541_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:54 2005
(648 letters)
>mm_chr7_63476784_63477824
Length = 1041
Score = 1176 bits (608), Expect = 0.0
Identities = 632/644 (98%), Gaps = 7/644 (1%)
Strand = Plus / Minus
Query: 5 gaattcaaacccgagacagcagaagcgggatattaagcaatcccaggaagcactaaaggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaattcaaacccgagacagcagaagcgggatattaagcaatcccaggaagcactaaaggt 782
Query: 65 aggagattccagtttattggtagaaaaatatctaccatcatggcccatgtacagcctcgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aggagattccagtttattggtagaaaaatatctaccatcatggcccatgtacagcctcgc 722
Query: 125 ctctacttgccttccagcatgcccctgctccttcctcagagcattttcctactctcaatc 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct: 721 ctctacttgccttccagcatgcccctgctccttcctcagagcattttccgactatgaatc 662
Query: 185 cctggctgcccagctcccctctagtgataactgttggaatgcctttgacttgcttattct 244
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 661 cctggttgcccagctcccctctagtgataactgttggaatgcctttgatttgcttattct 602
Query: 245 taagagaaggccttataactcctgttatcaagcctatactagctataaactcattatgta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taagagaaggccttataactcctgttatcaagcctatactagctataaactcattatgta 542
Query: 305 acctaggatggtttcatagtcacaattctcctgcccccacctttcaaatccacaccaact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acctaggatggtttcatagtcacaattctcctgcccccacctttcaaatccacaccaact 482
Query: 365 gctactctgaatcaggggcactaagacttcatacctttgcactgtctcctctcactccca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctactctgaatcaggggcactaagacttcatacctttgcactgtctcctctcactccca 422
Query: 425 tccagtgactgtcaatcaaaggctgctcagctcagggcccttcccacatccactatatgc 484
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 t-------ctgtcaatcaaaggctgctcagctcagggcccttcccacatccactatatgc 369
Query: 485 tgccctccactgttactgcctcagtgcaggctctccgacaccactgtccacatggcccca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgccctccactgttactgcctcagtgcaggctctccgacaccactgtccacatggcccca 309
Query: 545 tgattaacttagtggaagctcatcccacaggtgcttgcagcccgtaggaggtgcactcac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgattaacttagtggaagctcatcccacaggtgcttgcagcccgtaggaggtgcactcac 249
Query: 605 actacctcatattggatgcaacctgtctatatgttcttccctct 648
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 actacctcatattggatgcaacctgtctatatgttcttccctct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1041
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1031
Effective search space: 657778
Effective search space used: 657778
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_e24.g1 MSMg01no541_e24.g1 CHROMAT_FILE:
MSMg01no541_e24.g1 PHD_FILE: MSMg01no541_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:54 2005
(611 letters)
>mm_chr7_63338836_63339846
Length = 1011
Score = 1166 bits (603), Expect = 0.0
Identities = 609/611 (99%)
Strand = Plus / Plus
Query: 1 agggtgttcatcttgttttccatgactgttagcccttaggcatttcagttttagtttgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtgttcatcttgttttccatgactgttagcccttaggcatttcagttttagtttgcc 260
Query: 61 agtgtgcaggcctggtttcctacctgagcatgctcaagtagccagaaaactggtatctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtgcaggcctggtttcctacctgagcatgctcaagtagccagaaaactggtatctac 320
Query: 121 cattcaagggaggttggatgtggccttgtgattgactgtcaaggtctgagtcttgaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattcaagggaggttggatgtggccttgtgattgactgtcaaggtctgagtcttgaagtc 380
Query: 181 ttgactgttgtagtaaagacaggagataaacacaggagcattgatagcatgagggttagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgactgttgtagtaaagacaggagataaacacaggagcattgatagcatgagggttagt 440
Query: 241 tacaggtaatttaaggtaatttaatttacagtgtcaggtaacttagtctataggccagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacaggtaatttaaggtaatttaatttacagtgtcaggtaacttagtctataggccagga 500
Query: 301 ttttttaagttattttacagctacttaaaaaaaccaaaaaacaaaacaaaacaaaaacaa 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ttttttaagttattttacagctacttaaaaaaaccaaaaaccaaaacaaaacaaaaacaa 560
Query: 361 aacaaaaccaaacaacaacaaaaaacctcttgtgaaacaattaagacatccactagagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaaaaccaaacaacaacaaaaaacctcttgtgaaacaattaagacatccactagagag 620
Query: 421 aatagcttaagcatttattgtacaacatgactactttatcttccattaggatagttctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatagcttaagcatttattgtacaacatgactactttatcttccattaggatagttctat 680
Query: 481 aatgtattttttcattagttattcatattaaatgtattgaaatactacttttgaatttgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgtattttttcattagttattcatattaaatgtattgaaatactacttttgaatttgg 740
Query: 541 ggagacctatctagagcatacatgtaaaacaaataaggtgtggtggctctcacttgtcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggagacctatctagagcatacatgtaaaacaaataaggtgtggtggctctcacttgtcag 800
Query: 601 tcctggcacta 611
|||| ||||||
Sbjct: 801 tcctagcacta 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
