BAC Information

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BAC

Clone NameMSMg01-541M01
Chromosome7 (Build37)
Map Location 106,448,707 - 106,449,219
singlet/doubletsinglet
Overlap geneMtap6
Upstream genePhca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2
Downstream geneSerpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541M01.T7 (MSMg01no541_m01.b1)MSMg01-541M01.TJ (MSMg01no541_m01.g1)
ACCAG607694AG607695
length772731
length of high quality
(start - end)
358 (51 - 408)517 (86 - 602)
definitionCHROMAT_FILE: MSMg01no541_m01.b1 PHD_FILE: MSMg01no541_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:32 2005CHROMAT_FILE: MSMg01no541_m01.g1 PHD_FILE: MSMg01no541_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTATGTTTTCCCAAATGGCCTTGAAATCACCCTGCCACC
CAAGTACTGGGATTAAAGGCATTTGCCACCATGCACCTCTCTCTCTCTCT
CTCTCTCTCTCTCTTTCTCTCTCTTGCTCTCTCTCTCATTATTTATTTAA
TATACATAAGTACATTATCTATCTTCAGACACACCAGAAGAGGGCATCAG
ATCCCATTACAGATGGTTGTGAACCCATAGTTCAATTCCTATGTGGTTGC
TGGGAATTGAACTCAGGACCTCTGAAAGTTCAGTCAGTTCTCTTAACCAC
TGAGCCACCTCTCCAGCCCAACCCCCTATTGTTTTGTTTTATTTTTGTAG
CAATGTCTGTTGCAGCCCTGCCTGGCCTTTAATTCCATCTGTAGCCAAGG
ACAATCTTGAACTCCTGATCTCTCCTGGCTCCTCCTTCCAAATGTTATAT
TATTGTGTGAATTGTCCTGCAATAAGCCCTCTGATACTTACTATAGTGGA
AGATACATGCCTCCTCATATATTTAAACCAGTAGAGACCTTGAAAAGCTT
TTATTCCTTGTACTACTTCGCATTTCTCATTTTAAACCCCTAATACTCTA
CGTGTTTCATTGATTTCAAACATTATTTTATTAACAATTATATTTGAAAA
GCTCAAAAATTTAAAAACTCTTTTAATTCCATTGGACCCAATCGTATTTT
TCTCCCACATCTATTTTTAATC
TTTTTTCTCAATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCCCCGGGGCCC
TCAGAGCTGACAATGATCCCCAAGGCCGTGAACGTAGAAATGAATGTAGA
AGACATTAAAAGCTCTTAGAATTTGGAGATTTATTGAGTACATTAACGGA
TTTAAACTCAGAGCTATGTCCTTCGTGCTCACAAAGGTAATCTCACCACT
GGTAGAAATTTGTCCGTTTGGGGCTGGGGAGATGGCTCGGTGCTGAAGAG
CATGTGCTGCTCTGCAAAGGACTGAGTTGGATTCCAGTACCCACAGTGTG
TGGCTCCCAATCTCCTGAAACTTCAGCTCCAGGGGATCAACTGCCTTCTT
CCGGTCTCAGGTACCTGCACACATGTGCACAAGTTCCTCCACAGACGTAC
ACACAAACACGCGCACATAATTAAAAATAAAATAAAAATCTTCTTTTAAA
ACATAATAAATTCACTCACATAGATGTCTGGTGGTGCCCAAAACAGCCAA
TGAAAAAAGAGATACCTTAGCAGGTGGCCTTGCTAGATGGAACTGGATCA
TCCCATATGAGTGACACTATTGGATGCTCAGTGCTTATCTCCTGGGACCA
TAGATGATCTTCCCTGTAGAAATGGCCCTCATGTTCCTTCCTGGCTCCCT
TTCCGATATCACCAGAAAATAGTGAATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_m01.g1 MSMg01no541_m01.g1 CHROMAT_FILE:
MSMg01no541_m01.g1 PHD_FILE: MSMg01no541_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:32 2005
         (517 letters)



>mm_chr7_106448507_106449423
          Length = 917

 Score =  897 bits (464), Expect = 0.0
 Identities = 502/520 (96%), Gaps = 10/520 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgccccggggccctcagagctgacaatgatccccaaggccgtgaacgtagaaatgaat 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtcccggggccctcagagctgacaatgatccccaaggccgtgaacgtagaaatgaat 260

                                                                       
Query: 61  gtagaagacattaaaagctcttagaatttggagatttattgagtacattaacggatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagaagacattaaaagctcttagaatttggagatttattgagtacattaacggatttaa 320

                                                                       
Query: 121 actcagagctatgtccttcgtgctcacaaaggtaatctcaccactggtagaaatttgtcc 180
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 agtcagagctatgtccttcgtgctcacaaaggtaatctcaccactggtagaaatttgttc 380

                                                                       
Query: 181 gtttggggctggggagatggctcggtgctgaagagcatgtgctgctctgcaaaggactga 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttggggctggggagatggcttggtgctgaagagcatgtgctgctctgcaaaggactga 440

                                                                       
Query: 241 gttggattccagtacccacagtgtgtggctcccaatctcctgaaacttcagctccagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 441 gttggattccagtacccacagtgtgtggctcccaatctcctgaaacttcagttccaggga 500

                                                                       
Query: 301 atcaactgccttcttccggtctcaggtacctgcacacatgtgcacaagttcctccacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaactgccttcttccggtctcaggtacctgcacacatgtgcacaagttcctccacaga 560

                                                                       
Query: 361 cgtacacacaaacacgcgcacataattaaaaataaaataaaaatcttcttttaaaacata 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtacacacaaacacgcgcacataattaaaaataaaataaaaatcttcttttaaaacata 620

                                                                       
Query: 421 ataaattcactcacatagatgtctggtggtgcccaaaaca---gccaatgaaaaaagaga 477
           ||||||||||||||||||||| ||||||||||       |   |||||||||||||||||
Sbjct: 621 ataaattcactcacatagatgcctggtggtgc-------atgggccaatgaaaaaagaga 673

                                                   
Query: 478 taccttagcaggtggccttgctagatggaactggatcatc 517
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 taccttagcaggtggccttgctagatggaactggatcatc 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)