BAC Information

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BAC

Clone NameMSMg01-542A18
Chromosome7 (Build37)
Map Location 131,783,557 - 131,783,697
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628779
Downstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542A18.T7 (MSMg01no542_a18.b1)MSMg01-542A18.TJ (MSMg01no542_a18.g1)
ACCAG607917AG607918
length758760
length of high quality
(start - end)		700 (48 - 747)688 (73 - 760)
definitionCHROMAT_FILE: MSMg01no542_a18.b1 PHD_FILE: MSMg01no542_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:56 2005CHROMAT_FILE: MSMg01no542_a18.g1 PHD_FILE: MSMg01no542_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTG
ATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GTCTACTTTGGACAAATATATCTTTGCTCTTGGATTGATTAATATATACT
ATATTCCTCCTAGACATGATTAGTTTCAGGATTAGGCAGGTTAAGTAAGT
TAGAACAGTCAGTGAGAGGTTCAGGACTGTTCTAGTGTTGGGGAAGAGAA
GTTCTCTN

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCTATGGTTTAGATCTTGAGGCTGGAA
GACACGAGTTTATGATCTGGACCTTGGCATGGAGATCTTGAGGCATAGTG
GCCATGAAAAGTTTAGGTCCAGGAAAGTATGCCACTAATCCCAGGAGAAT
GTGGCAATCAAATCTAAGAGTTCAAGGACATCCTGGGAAAAATCAAGTCC
CAGATCCAGGCTTGGTGAAACACATCTTAATCTGGGCTACACCTTATGTT
GGAGGCCTACATAAGGATATTGGAAGAAGGAAGATTCACTCTTCTTCTGT
TTACATTTACTTGCTAGCACATCTGTTGGAACCTACTTTTACAGAAGACC
AGCTGAAATACCTACCCTCGTGGGACTGAGCAAATACCAAATTCTTGGAC
TTCCCATTCACAGCCAACCATTGTTGGGTTAGTTGGACTACAGACAGAAA
GTCATCACAGTAAACTCCCTCAATATAGAGAGACATTCCATAAGTTCTAT
GATTCTAGAGAACCCTGGTTTAAAAAACAAAAAACAAACAAACAAACAAA
AATCTGGTATTGGGAGTATAATATTTATGTGACAGCCTGACCATGTTTTG
GGGAGGACTGTGAAAGGACTTTAGAACTTTGAGCTAAAAAAGCCATTGGG
ATGTTAAGAGCTCTGTGGAATGTTCTGTTGGAGCTTGGAAATAATGTTGA
GGGCAGTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_a18.b1 MSMg01no542_a18.b1 CHROMAT_FILE:
MSMg01no542_a18.b1 PHD_FILE: MSMg01no542_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:56 2005
         (700 letters)



>mm_chr7_131782796_131783895
          Length = 1100

 Score =  265 bits (137), Expect = 8e-75
 Identities = 140/141 (99%)
 Strand = Plus / Minus

                                                                       
Query: 560 tttggacaaatatatctttgctcttggattgattaatatatactatattcctcctagaca 619
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 tttggacaaatataactttgctcttggattgattaatatatactatattcctcctagaca 843

                                                                       
Query: 620 tgattagtttcaggattaggcaggttaagtaagttagaacagtcagtgagaggttcagga 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 tgattagtttcaggattaggcaggttaagtaagttagaacagtcagtgagaggttcagga 783

                                
Query: 680 ctgttctagtgttggggaaga 700
           |||||||||||||||||||||
Sbjct: 782 ctgttctagtgttggggaaga 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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