Query= MSMg01no542_f09.b1 MSMg01no542_f09.b1 CHROMAT_FILE:
MSMg01no542_f09.b1 PHD_FILE: MSMg01no542_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:20 2005
(620 letters)
>mm_chr7_116907157_116908175
Length = 1019
Score = 1145 bits (592), Expect = 0.0
Identities = 612/619 (98%), Gaps = 1/619 (0%)
Strand = Plus / Plus
Query: 2 ggaattctgttctgcttcctaatatccctattaatgtgtctttatccatctgcggataac 61
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctattctgcatcctaatatccctattaatgtgtctttatccatctgcggataac 261
Query: 62 agatatcagagggcaaattaatcctaacttagaaaaggcttcgttcaaggtccatttttc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agatatcagagggcaaattaatcctaacttagaaaaggcttcgttcaaggtccatttttc 321
Query: 122 tccttcctatttcaatttcttgtcataacattgtcttagtctataaggctaatggagaca 181
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 tccttcctatttcaatttcttgtcataaaattgtcttagtctataaggctaatggagaca 381
Query: 182 ggcacttgtttggtaagactattgatactggttagcagcaaagcatattatggggaaagt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggcacttgtttggtaagactattgatactggttagcagcaaagcatattatggggaaagt 441
Query: 242 cctccctaatttgacttgcctttgctgggatggaaggaaaggaacagcaccaaggtttca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctccctaatttgacttgcctttgctgggatggaaggaaaggaacagcaccaaggtttca 501
Query: 302 cacaattacataagctgattggaatagctagcacccgagctattatgggctggtggataa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cacaattacataagctgattggaatagctagcacccgagctattatgggctggtggataa 561
Query: 362 atacttaattagggattttctgtgccaatacttctgttttcctccatttcctctcttttg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atacttaattagggattttctgtgccaatacttctgttttcctccatttcctctcttttg 621
Query: 422 gtattacagcccatccaaaagaaaactaattgcagttttacagatggttattaattcctc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtattacagcccatccaaaagaaaactaattgcagttttacagatggttattaattcctc 681
Query: 482 cggaaccatggcagtctgctgcctaattatgcaccaggacatcattagtctttctggaac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cggaaccatggcagtctgctgcctaattatgcaccaggacatcattagtctttctggaac 741
Query: 542 catcatattgtacatacctcatctcttcactacataaaanaaaaaaaaaacaaagacnaa 601
||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||
Sbjct: 742 catcatattgtacatacctcatctcttcactacattaaa-aaaaaaaaaccaaagacaaa 800
Query: 602 aaacttaagattcttccca 620
|||||||||||||||||||
Sbjct: 801 aaacttaagattcttccca 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space: 615490
Effective search space used: 615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_f09.g1 MSMg01no542_f09.g1 CHROMAT_FILE:
MSMg01no542_f09.g1 PHD_FILE: MSMg01no542_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:20 2005
(652 letters)
>mm_chr7_117037338_117038390
Length = 1053
Score = 1255 bits (649), Expect = 0.0
Identities = 652/653 (99%), Gaps = 1/653 (0%)
Strand = Plus / Minus
Query: 1 aacatcacactggacacttccctcgttaagggcattgacatctgacctctgagcaccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aacatcacactggacacttccctcgttaagggcattgacatctgacctctgagcaccagc 794
Query: 61 cagcagcaggacccagaaagactccctgcagctctgcctcttcatcccaaagggacctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 cagcagcaggacccagaaagactccctgcagctctgcctcttcatcccaaagggacctaa 734
Query: 121 gcaagttgtgggggacagagaggatatgtatacttactgtaaaaagaaaactagaggatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gcaagttgtgggggacagagaggatatgtatacttactgtaaaaagaaaactagaggatt 674
Query: 181 tttgg-aaaaaaataatctattttagagtttatttgctgacctgctttttacacactttc 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tttggaaaaaaaataatctattttagagtttatttgctgacctgctttttacacactttc 614
Query: 240 atgtgaaagagacagagaggggcaaggttggcgctgcttgttttgaagctggtgcctccc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atgtgaaagagacagagaggggcaaggttggcgctgcttgttttgaagctggtgcctccc 554
Query: 300 ttgcatggccgcacgctgggagcctgtggcctcccagactgagcctgcaacaagtgtggg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttgcatggccgcacgctgggagcctgtggcctcccagactgagcctgcaacaagtgtggg 494
Query: 360 gctgttccacatgccgccccgtcacggcggtgaggccattccacatcgtttttaaactaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gctgttccacatgccgccccgtcacggcggtgaggccattccacatcgtttttaaactaa 434
Query: 420 tgttttctatattaacattattctggctatctggctttcacgggccacgcacaggtgtgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgttttctatattaacattattctggctatctggctttcacgggccacgcacaggtgtgc 374
Query: 480 gagtgggacatcccatgctccaatcaaagggatttttagcagtgcctctgatcaagcact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gagtgggacatcccatgctccaatcaaagggatttttagcagtgcctctgatcaagcact 314
Query: 540 gccaagtcagctccacatccgtttccccccttccccttttttgtcagtattatttgggaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gccaagtcagctccacatccgtttccccccttccccttttttgtcagtattatttgggaa 254
Query: 600 ggagacatgccaggacaatgtcattgtgctacatgcagaaaatcatgtttcct 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggagacatgccaggacaatgtcattgtgctacatgcagaaaatcatgtttcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space: 669606
Effective search space used: 669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
