Query= MSMg01no542_h23.b1 MSMg01no542_h23.b1 CHROMAT_FILE:
MSMg01no542_h23.b1 PHD_FILE: MSMg01no542_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:33 2005
(635 letters)
>mm_chr7_61997204_61998239
Length = 1036
Score = 1149 bits (594), Expect = 0.0
Identities = 621/630 (98%), Gaps = 1/630 (0%)
Strand = Plus / Plus
Query: 7 attcttgcttatgtgtcgataaacataaagcctattattcttgtagtgatt-tttttaat 65
||||||||||||| || ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 207 attcttgcttatgagttgatgaacataaagcctattattcttgtagtgattatttttaat 266
Query: 66 caggaataattttagcacaaaaattatcaaaagcctcaaatgagtgacggacagcatatc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caggaataattttagcacaaaaattatcaaaagcctcaaatgagtgacggacagcatatc 326
Query: 126 agaaatatggaacattcataataggaacaaagagaataaaaataaaacctgtgttgattt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agaaatatggaacattcataataggaacaaagagaataaaaataaaacctgtgttgattt 386
Query: 186 aagcaaatactgtcaacagaaactgtgcctaatcagatattaacattcaattttcaaaaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aagcaaatactgtcaacagaaactgtgcctaatcagatattaacattcaattttcaaaaa 446
Query: 246 tcctaatataacatggtactgcataaagacaagagcatggctgtgcacagcaaattaaac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcctaatataacatggtactgcataaagacaagagcatggctgtgcacagcaaattaaac 506
Query: 306 caatcttgttggttgttcaaatagaaatcgggtgcttttctttcacacatgagtccagag 365
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 507 aaatcttgttggttgttcaaatagaaatcgggtgcttttctttcacatatgagtccagag 566
Query: 366 gcattctatcactagaatttgtgagcttaagtaagctacttgcactgtagagttttgttt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 567 gcattctatcactagaatttgtgagcttaagtaagctacttgcactgtagagtttggttt 626
Query: 426 attttcactggtcattatataaattggtattcagagtttccttaaggattaaacatgatt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 attttcactggtcattatataaattggtattcagagtttccttaaggattaaacatgatt 686
Query: 486 atgcacgtaaaagtttcagagcttaggaaaatacaagacaatagtgccttgcttcagatg 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 687 atgcacgtaaaagtttcagagcttaggaaaatacaagacaatagtgccttgctttagatg 746
Query: 546 ctgtgccactgctactatgctttgccttttatgccctccacttgcctacttgtcctagtt 605
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctgtgccgctgctactatgctttgccttttatgccctccacttgcctacttgtcctagtt 806
Query: 606 tgcttctctgttgttacaatgaatgtctga 635
||||||||||||||||||||||||||||||
Sbjct: 807 tgcttctctgttgttacaatgaatgtctga 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space: 641250
Effective search space used: 641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_h23.g1 MSMg01no542_h23.g1 CHROMAT_FILE:
MSMg01no542_h23.g1 PHD_FILE: MSMg01no542_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:33 2005
(566 letters)
>mm_chr7_62123342_62124309
Length = 968
Score = 913 bits (472), Expect = 0.0
Identities = 541/568 (95%), Gaps = 10/568 (1%)
Strand = Plus / Minus
Query: 1 ttactgtggtgatctaaacaaatagttgtgtttgcttcttagatgaataggaacaggttg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ttactgtggtgatctaaacaaatagttgtgtttgcttcttagatgaataggaacaggtta 705
Query: 61 gatagaacatgcaaagtggagccactcagtcagaaatgtagaagcaatggctgtatttaa 120
|||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 704 gatagagcatgcaaagtggagccgctcagtcagaaatgtagaatcaatggctgtatttaa 645
Query: 121 tactgtcttc--cagtggctttactctgttcacatagttatcaaggtcatcttgatattc 178
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tactg--ttctacagtggctttactctgttcacatagttatcaaggtcatcttgatattc 587
Query: 179 ctcagctcagagagcaccacagccattcaatgctgttctcctttgttttaagttgcatgg 238
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 586 ctcagctcagagagcaccacagccattcaatggtgttctcctttgttttaacttgcatgg 527
Query: 239 cttttgccatcttcatcctaaggcataggat----gggtatgggtaatctattccttcta 294
||| |||||||||||||||||||||||| | || |||| ||||||||| |||||
Sbjct: 526 cttctgccatcttcatcctaaggcatag--tcttctggcatggacaatctattctttcta 469
Query: 295 aacaagctttgggtatatgaaatttcaagcttttggctaaagaaaataataccaataagc 354
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aacaagctttggatatatgaaatttcaagcttttggctaaagaaaataataccaataagc 409
Query: 355 atagttacattacacagaaaacacagcatcaaaacctgataaagtggttgtttcctacat 414
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atagttacattacatggaaaacacagcatcaaaacctgataaagtggttgtttcctacat 349
Query: 415 tcatcacccaggcaagttttcccagtatctaaatcaggcttatgaatagaagagaaaagg 474
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 348 tcatcacccaggcaagttttcccagtatctaaatcaggtttatgaatagaagagaaaagg 289
Query: 475 aatagacagcagtttagctgtggagacatgtgccataaaagcacaactcactatgataat 534
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 288 aatagacagcagtttagctgtggagacatgtgccgtaaaagcacaactcactatgataat 229
Query: 535 tgctcctacctacagtgtttattcctta 562
||||||||||||||||||||||||||||
Sbjct: 228 tgctcctacctacagtgtttattcctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 968
Length adjustment: 10
Effective length of query: 556
Effective length of database: 958
Effective search space: 532648
Effective search space used: 532648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
