Query= MSMg01no543_d03.b1 MSMg01no543_d03.b1 CHROMAT_FILE:
MSMg01no543_d03.b1 PHD_FILE: MSMg01no543_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:29 2005
(591 letters)
>mm_chr7_82715096_82716086
Length = 991
Score = 1009 bits (522), Expect = 0.0
Identities = 538/548 (98%), Gaps = 8/548 (1%)
Strand = Plus / Minus
Query: 5 gaattcaccaagtctgtatttaatatttaataaagcttgcttcaaaatttggaggaatac 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaattcaccaagtcagtatttaatatttaataaagcttgcttcaaaatttggaggaatac 489
Query: 65 tctatataatgttgatagcttcattatttctccttaaagaataatggtagaattagtctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tctatataatgttgatagcttcattatttctccttaaagaataatggtagaattagtctt 429
Query: 125 tctctttcaaatctcaggattaacaaagacactgtgcaccccagacatgaggtatgtatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tctctttcaaatctcaggattaacaaagacactgtgcaccccagacatgaggtatgtatt 369
Query: 185 attaattaggttttctgttttggttttgtcactgtgaaactcacaataaaataaattctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attaattaggttttctgttttggttttgtcactgtgaaactcacaataaaataaattctg 309
Query: 245 aagcatcatcatgataatcacatgagaatgtatacctcccatgtagctctcagttttctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aagcatcatcatgataatcacatgagaatgtatacctcccatgtagctctcagttttctc 249
Query: 305 aagctctaaccaattagtgggtttgttcc--------tttttttttttttttgctgatcc 356
|||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 248 aagctctaacaaattagtgggtttgttcctttttttttttttttttttttttgctgatcc 189
Query: 357 taatactgatacccttcaatttgtaatgtcactttacttctaggtaggttcatacgtgtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 taatactgatacccttcaatttgtaatgtcactttacttctaggtaggttcatacgtgtg 129
Query: 417 tggagcaaacaaaagcactagcaatatacttaaagatctaacaacagctgttaggtgagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tggagcaaacaaaagcactagcaatatacttaaagatctaacaacagctgttaggtgagc 69
Query: 477 actctgctttgctccttctattactctatactaaccaaatatgtgtgcgtgtgtccccgt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 actctgctttgctccttctattactctatactaaccaaatatgtgtgcgtgtgtccccgt 9
Query: 537 ccccacca 544
||||||||
Sbjct: 8 ccccacca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_d03.g1 MSMg01no543_d03.g1 CHROMAT_FILE:
MSMg01no543_d03.g1 PHD_FILE: MSMg01no543_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:29 2005
(598 letters)
>mm_chr7_82568899_82569896
Length = 998
Score = 1110 bits (574), Expect = 0.0
Identities = 592/598 (98%)
Strand = Plus / Plus
Query: 1 aacatggtgttggatcggataaaaacaagcagctgagagtcatagcagccaccctgaggt 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aacatggtgttggaacggataaaaacaagcagctgagagtcatagcagccaccccgaggt 260
Query: 61 tttaagctgaggagatgggaaatacccagagagggctgcacatctccattcttgggactg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tttaagctgaggagataggaaatacccagagagggctgcacatctccattcttcggactg 320
Query: 121 tccctagatgcatttggtcccagaaagcagctgctatgactgactgctggagaaaaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctagatgcatttggtcccagaaagcagctgctatgactgactgctggagaaaaaggt 380
Query: 181 cttgatggtatggaattcaggcgactgtaattacagataataggtctcaatttgcccgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgatggtatggaattcaggcgactgtaattacagataataggtctcaatttgcccgtc 440
Query: 241 aggaattcgcacagttggctctatcactgggaatttaaatatttttacttcccaattgtg 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaatttgcacagttggctctatcactgggaatttaaatatttttacttcccaattgtg 500
Query: 301 cattgaagtcagacagcagatgaagcagaagtggtccaagattctcaccagctcagtaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattgaagtcagacagcagatgaagcagaagtggtccaagattctcaccagctcagtaca 560
Query: 361 tttgccttggaaatgtccagaacatccttgtggccttcccccatcaagggagttttccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgccttggaaatgtccagaacatccttgtggccttcccccatcaagggagttttccct 620
Query: 421 gagcaagctcaagccactgttgggtcctgggtctggaaagttgaagaagcagggcttgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagcaagctcaagccactgttgggtcctgggtctggaaagttgaagaagcagggcttgct 680
Query: 481 ggtatggtaacaatagagcattttcttggagcctgtgatgaattatgagaactgtgtcca 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcatggtaacaatagagcattttcttggagcctgtgatgaattatgagaactgtgtcca 740
Query: 541 ctggatgctagtctttgattgaggatgacatagtgttccatcacactgtctggaacca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggatgctagtctttgattgaggatgacatagtgttccatcacactgtctggaacca 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
